Pre_GI: BLASTP Hits

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Query: NC_010322:29983:44252 Pseudomonas putida GB-1 chromosome, complete genome

Start: 44252, End: 44602, Length: 351

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002947:8394:314043140431844441Pseudomonas putida KT2440, complete genomehypothetical protein4e-49192
NC_010501:30000:481864818648536351Pseudomonas putida W619, complete genomehypothetical protein5e-49192
NC_009512:27783:434704347043820351Pseudomonas putida F1, complete genomehypothetical protein5e-49192
NC_017986:2548720:257767225776722578022351Pseudomonas putida ND6 chromosome, complete genomehypothetical protein5e-48189
NC_015733:5909821:593397559339755934274300Pseudomonas putida S16 chromosome, complete genomehypothetical protein6e-38155
NC_018678:554675:575458575458575811354Alteromonas macleodii str. 'English Channel 673' chromosome,hypothetical protein2e-23107
NC_007520:2305610:232402823240282324378351Thiomicrospira crunogena XCL-2, complete genomehypothetical protein9e-0752.4
NC_007759:2179000:219986821998682200221354Syntrophus aciditrophicus SB, complete genomehypothetical membrane protein7e-0649.3