Pre_GI: BLASTP Hits

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Query: NC_010322:29983:38639 Pseudomonas putida GB-1 chromosome, complete genome

Start: 38639, End: 39562, Length: 924

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009512:27783:378573785738780924Pseudomonas putida F1, complete genomehypothetical protein0636
NC_002947:8394:258812588126804924Pseudomonas putida KT2440, complete genomehypothetical protein2e-180631
NC_017986:2548720:256688925668892567809921Pseudomonas putida ND6 chromosome, complete genomehypothetical protein2e-160565
NC_010501:30000:427654276543496732Pseudomonas putida W619, complete genomehypothetical protein5e-141500
NC_009656:4527457:465271646527164653633918Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein2e-83308
NC_013421:701005:704395704395705297903Pectobacterium wasabiae WPP163, complete genomehypothetical protein3e-46185
NC_010623:1871492:187821018782101879133924Burkholderia phymatum STM815 chromosome 2, complete sequencehypothetical protein5e-26118