Pre_GI: BLASTP Hits

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Query: NC_010102:4557037:4571252 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 4571252, End: 4571935, Length: 684

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014121:489500:512285512285512971687Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein2e-111401
NC_012214:537000:554178554178554903726Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein6e-104376
NC_012214:3303955:330395533039553304680726Erwinia pyrifoliae Ep1/96, complete genomeputative phage-related protein6e-104376
NC_012779:346998:367623367623368306684Edwardsiella ictaluri 93-146, complete genomehypothetical protein5e-95347
NC_009801:3374501:338741233874123388104693Escherichia coli E24377A, complete genomehypothetical protein4e-92337
NC_011745:3443371:345681034568103457607798Escherichia coli ED1a chromosome, complete genomehypothetical protein9e-92336
NC_016816:4129299:417180941718094172525717Pantoea ananatis LMG 5342, complete genometype I restriction-modification system methyltransferase subunit2e-85315
NC_012962:3864000:3866446386644638676481203Photorhabdus asymbiotica, complete genomeProbable phage integrase2e-70265
NC_013892:1503162:151798315179831518669687Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein1e-65249
NC_009832:4482500:449584144958414496407567Serratia proteamaculans 568, complete genomehypothetical protein2e-48191
NC_004547:639726:6551506551506571111962Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein8e-47186
NC_013421:701005:7323617323617343221962Pectobacterium wasabiae WPP163, complete genomedomain of unknown function DUF17388e-46183
NC_012962:3864000:3870561387056138724111851Photorhabdus asymbiotica, complete genomehypothetical protein2e-42172
NC_009650:65732:688716887169704834Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN4,hypothetical protein1e-39162
NC_016832:4425330:4439548443954844414971950Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein3e-39161
NC_012125:4536383:4550636455063645525851950Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein3e-39161
NC_003198:4453457:4467675446767544696241950Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-39161
NC_016809:112410:131457131457132218762Haemophilus influenzae 10810, complete genometype I restriction enzyme M subunit2e-37155
NC_014253:575360:619343619343620086744Methanohalobium evestigatum Z-7303 chromosome, complete genomehypothetical protein2e-31135
NC_015563:2018038:2020147202014720211841038Delftia sp. Cs1-4 chromosome, complete genomehypothetical protein5e-25114
NC_018607:135612:165154165154165927774Brachyspira pilosicoli B2904 chromosome, complete genomeType I restriction-modification system methyltransferase subunit5e-1891.3
NC_014150:1523108:152798015279801528699720Brachyspira murdochii DSM 12563 chromosome, complete genomehypothetical protein3e-1685.5
NC_014150:1936154:196610719661071966826720Brachyspira murdochii DSM 12563 chromosome, complete genomehypothetical protein3e-1685.5
NC_015943:95971:110949110949111773825Haloarcula hispanica ATCC 33960 chromosome chromosome II, completeType I restriction-modification system methyltransferase subunit-like protein5e-1064.7
NC_015943:95971:103985103985104809825Haloarcula hispanica ATCC 33960 chromosome chromosome II, completeType I restriction-modification system methyltransferase subunit-like protein3e-0858.9
NC_002607:81452:8766887668891671500Halobacterium sp. NRC-1, complete genomeRmeM9e-0857
NC_014664:1560926:156723115672311567992762Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomeN-6 DNA methylase5e-0651.6