Pre_GI: BLASTP Hits

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Query: NC_009800:2995958:3019162 Escherichia coli HS, complete genome

Start: 3019162, End: 3019437, Length: 276

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:903241:915849915849916142294Escherichia coli KO11FL chromosome, complete genomeInvH outer membrane lipoprotein5e-38155
CP002516:903241:915849915849916142294Escherichia coli KO11, complete genomeInvH outer membrane lipoprotein5e-38155
CP002185:3167738:318993431899343190227294Escherichia coli W, complete genomeconserved hypothetical protein5e-38155
NC_011751:3285646:330670733067073307000294Escherichia coli UMN026 chromosome, complete genomehypothetical protein2e-37154
NC_011741:3030324:305113930511393051432294Escherichia coli IAI1 chromosome, complete genomehypothetical protein3e-37153
NC_011748:3196173:321698832169883217281294Escherichia coli 55989, complete genomehypothetical protein3e-37153
CU928160:3030324:305113930511393051432294Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein3e-37153
CU928145:3196173:321698832169883217281294Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein3e-37153