Pre_GI: BLASTP Hits

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Query: NC_009800:2995958:3008139 Escherichia coli HS, complete genome

Start: 3008139, End: 3008279, Length: 141

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:903241:926017926017926157141Escherichia coli KO11FL chromosome, complete genomehypothetical protein2e-1891.3
NC_011415:3217796:322859432285943228734141Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-1891.3
CP002516:903241:926017926017926157141Escherichia coli KO11, complete genomehypothetical protein2e-1891.3
NC_009801:3175714:318651231865123186652141Escherichia coli E24377A, complete genomehypothetical protein2e-1891.3
NC_011353:3805819:381661838166183816743126Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein1e-1582
NC_016822:3282654:32956503295650329573081Shigella sonnei 53G, complete genomehypothetical protein2e-0754.3
CP002185:3167738:31799193179919317999981Escherichia coli W, complete genomesmall stress response protein2e-0754.3