Pre_GI: BLASTP Hits

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Query: NC_009512:3618055:3620139 Pseudomonas putida F1, complete genome

Start: 3620139, End: 3620855, Length: 717

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009512:1518113:153004315300431530759717Pseudomonas putida F1, complete genome4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase2e-97355
NC_013716:3327881:332997333299733330686714Citrobacter rodentium ICC168, complete genomeputative methyl transferase1e-75282
NC_014817:29795:322763227632965690Asticcacaulis excentricus CB 48 chromosome 2, complete sequence4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase7e-60230
NC_016604:3137694:314377031437703144462693Mycobacterium rhodesiae NBB3 chromosome, complete genome4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase1e-54213
NC_014206:2971304:298171029817102982435726Geobacillus sp. C56-T3 chromosome, complete genomedimethylmenaquinone methyltransferase9e-46183
NC_012522:3038890:304859130485913049262672Rhodococcus opacus B4, complete genomeputative 4-carboxy-4-hydroxy-2-oxoadipate aldolase5e-36151
NC_010086:1816378:182093918209391821637699Burkholderia multivorans ATCC 17616 chromosome 2, completeDimethylmenaquinone methyltransferase1e-21103
NC_014258:127500:140638140638141330693Pantoea vagans C9-1 plasmid pPag3, complete sequenceputative demethylmenaquinone methyltransferase3e-21102
NC_016048:3899878:391144839114483912131684Oscillibacter valericigenes Sjm18-20, complete genomealdolase4e-2098.2
NC_014910:1765065:179211617921161792748633Alicycliphilus denitrificans BC chromosome, complete genomedimethylmenaquinone methyltransferase1e-1996.7
NC_015137:2616222:262897226289722629649678Burkholderia sp. CCGE1001 chromosome 2, complete sequenceDimethylmenaquinone methyltransferase4e-1891.7
NC_015873:790961:800227800227800916690Megasphaera elsdenii DSM 20460, complete genomedimethylmenaquinone methyltransferase7e-1890.9
NC_014974:1076565:108607210860721086740669Thermus scotoductus SA-01 chromosome, complete genomedimethylmenaquinone methyltransferase7e-1890.9
NC_015727:1076927:108099210809921081660669Cupriavidus necator N-1 plasmid BB1p, complete sequencedimethylmenaquinone methyltransferase MenG9e-1890.5
NC_014910:1050706:105552010555201056194675Alicycliphilus denitrificans BC chromosome, complete genomedimethylmenaquinone methyltransferase2e-1789.4
NC_018581:759932:779297779297779950654Gordonia sp. KTR9 chromosome, complete genomeDemethylmenaquinone methyltransferase4e-1684.7
NC_015389:616430:635976635976636683708Coriobacterium glomerans PW2 chromosome, complete genomeDimethylmenaquinone methyltransferase4e-1581.6
NC_009512:1518113:153624715362471536885639Pseudomonas putida F1, complete genomeDimethylmenaquinone methyltransferase6e-1581.3
NC_010505:3690000:371358537135853714232648Methylobacterium radiotolerans JCM 2831, complete genomeDimethylmenaquinone methyltransferase7e-1580.9
NC_015186:2165628:218785521878552188535681Acidiphilium multivorum AIU301, complete genomeputative 4-carboxy-4-hydroxy-2-oxoadipate aldolase9e-1580.5
NC_014391:1910273:193815719381571938861705Micromonospora aurantiaca ATCC 27029 chromosome, complete genomedimethylmenaquinone methyltransferase1e-1479.7
NC_020911:3046916:306754330675433068232690Octadecabacter antarcticus 307, complete genomehypothetical protein2e-1479.3
NC_015953:2681331:269576726957672696390624Streptomyces sp. SirexAA-E chromosome, complete genomeDimethylmenaquinone methyltransferase8e-1477.4
NC_010511:3947948:395954139595413960167627Methylobacterium sp. 4-46 chromosome, complete genomedimethylmenaquinone methyltransferase3e-1375.1
NC_015733:1976752:199801119980111998688678Pseudomonas putida S16 chromosome, complete genomehypothetical protein6e-1374.3
NC_012792:1091669:110844111084411109112672Variovorax paradoxus S110 chromosome 2, complete genomeDimethylmenaquinone methyltransferase1e-1273.2
NC_012660:4734363:473569747356974736362666Pseudomonas fluorescens SBW25 chromosome, complete genomeputative aldolase2e-1272.8
NC_013093:4890557:490029249002924900882591Actinosynnema mirum DSM 43827, complete genomeDimethylmenaquinone methyltransferase2e-1272.8
NC_016582:93754:974799747998117639Streptomyces bingchenggensis BCW-1 chromosome, complete genomedimethylmenaquinone methyltransferase7e-1270.9
NC_016023:579000:602240602240602860621Bacillus coagulans 36D1 chromosome, complete genomeDimethylmenaquinone methyltransferase2e-1169.7
NC_011892:352652:361972361972362682711Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completeDimethylmenaquinone methyltransferase2e-1065.9
NC_015634:652000:652074652074652694621Bacillus coagulans 2-6 chromosome, complete genomeDimethylmenaquinone methyltransferase9e-1063.9
NC_009511:2726296:274098727409872741685699Sphingomonas wittichii RW1 chromosome, complete genomedimethylmenaquinone methyltransferase1e-0963.9
NC_009712:669647:6707536707536720391287Candidatus Methanoregula boonei 6A8, complete genomebifunctional hexulose-6-phosphate synthase/ribonuclease regulator2e-0859.3
NC_019977:253895:2734122734122745631152Methanomethylovorans hollandica DSM 15978, complete genomeDemethylmenaquinone methyltransferase1e-0757
NC_011894:957897:967729967729968400672Methylobacterium nodulans ORS 2060, complete genomeDimethylmenaquinone methyltransferase3e-0755.8
NC_003911:2540453:256384325638432564538696Silicibacter pomeroyi DSS-3, complete genomealdolase, putative6e-0754.3
NC_013665:849508:8543158543158556011287Methanocella paludicola SANAE, complete genome3-hexulose-6-phosphate synthase7e-0754.3
NC_007951:2233676:223367622336762234383708Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative dimethylmenaquinone methyltransferase2e-0652.8
NC_014008:669170:675670675670676317648Coraliomargarita akajimensis DSM 45221 chromosome, complete genomeDimethylmenaquinone methyltransferase5e-0651.6