Pre_GI: BLASTP Hits

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Query: NC_009438:2058566:2071093 Shewanella putrefaciens CN-32 chromosome, complete genome

Start: 2071093, End: 2074029, Length: 2937

Host Lineage: Shewanella putrefaciens; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Shewanella putrefaciens is a Gram-negative bacterium. It has been isolated from marine environments, as well as from anaerobic sandstone in the Morrison formation in New Mexico, USA. S. putrefaciens is also a facultative anaerobe with the ability to reduce iron and manganese metabolically; that is, it can use iron and manganese as the terminal electron acceptor in the electron transport chain (in contrast to obligate aerobes which must use oxygen for this purpose). It is also one of the organisms associated with the odor of rotting fish, as it is a marine organism which produces trimethylamines (hence the species name putrefaciens, from putrid). This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This species, along with Shewanella algae, are the only Shewanella spp. to be found in clinical speciments. Normally found in marine environments in warmer temperatures, infections seem to occur more frequently in countries with a warm climate and in other countries during warm summer months.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009665:3869904:3869904386990438732843381Shewanella baltica OS185 chromosome, complete genomeCRISPR-associated helicase Cas3 family protein1e-47192
NC_016901:3936944:3936944393694439403243381Shewanella baltica OS678 chromosome, complete genomeCRISPR-associated helicase Cas3 family5e-47190
NC_009997:3988980:3988980398898039923603381Shewanella baltica OS195, complete genomeCRISPR-associated helicase Cas3 family5e-47190
NC_017098:477000:4832094832094865953387Spirochaeta africana DSM 8902 chromosome, complete genomeCRISPR-associated helicase Cas3, subtype I-F/YPEST7e-34146
NC_015873:1933036:1937955193795519412783324Megasphaera elsdenii DSM 20460, complete genomeCRISPR-associated helicase Cas32e-30135
NC_013889:2561381:2567856256785625712243369Thioalkalivibrio sp. K90mix chromosome, complete genomeCRISPR-associated helicase Cas3 family3e-30134
NC_014532:110875:1188971188971222383342Halomonas elongata DSM 2581, complete genomeK070129e-28126
NC_014216:1787000:1796081179608117993563276Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomeCRISPR-associated helicase Cas3 family4e-27124
NC_013421:4006085:4023380402338040266703291Pectobacterium wasabiae WPP163, complete genomeCRISPR-associated helicase Cas3 family8e-27123
NC_014836:993448:1004110100411010080103901Desulfurispirillum indicum S5 chromosome, complete genome1e-26122
NC_018145:683874:6976696976697011093441Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completeCRISPR-associated helicase Cas3 family1e-25119
NC_016818:1963875:1963875196387519671233249Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeCRISPR-associated helicase Cas3, subtype I-F/YPEST9e-25116
NC_012796:4693500:4730905473090547341593255Desulfovibrio magneticus RS-1, complete genomehypothetical protein1e-23112
NC_015436:1322087:1325827132582713291203294Spirochaeta coccoides DSM 17374 chromosome, complete genomeCRISPR-associated helicase Cas3 family1e-21105
NC_019978:922978:9399719399719423132343Halobacteroides halobius DSM 5150, complete genomeCRISPR-associated helicase Cas32e-1482
NC_017096:260333:2653822653822676282247Caldisericum exile AZM16c01, complete genomeputative CRISPR-associated protein2e-1068.6
NC_019942:1370872:1377646137764613798472202Aciduliprofundum sp. MAR08-339, complete genomeDEAD/DEAH box helicase9e-1066.6
NC_015416:2838020:2843201284320128456032403Methanosaeta concilii GP-6 chromosome, complete genomeCRISPR-associated helicase Cas37e-0963.5
NC_015571:290355:3024493024493047522304Porphyromonas gingivalis TDC60, complete genomeCRISPR-associated helicase Cas37e-0860.1
NC_015680:1275252:1275252127525212773302079Pyrococcus yayanosii CH1 chromosome, complete genomeCRISPR-associated helicase Cas3 domain-containing protein1e-0759.7
NC_000918:246792:2467922467922489812190Aquifex aeolicus VF5, complete genomehypothetical protein1e-0759.3
NC_002950:2098454:2106124210612421084602337Porphyromonas gingivalis W83, complete genomeCRISPR-associated helicase Cas36e-0757.4
NC_000916:983500:1001172100117210036642493Methanothermobacter thermautotrophicus str. Delta H, completehypothetical protein4e-0654.7
NC_015676:1663700:1675169167516916779222754Methanosalsum zhilinae DSM 4017 chromosome, complete genomeCRISPR-associated helicase Cas34e-0654.3
NC_015557:583475:5965515965515988422292Hydrogenobaculum sp. 3684 chromosome, complete genomeCRISPR-associated helicase Cas34e-0654.3
NC_015587:583530:5966065966065988972292Hydrogenobaculum sp. SHO chromosome, complete genomeCRISPR-associated helicase Cas34e-0654.3
NC_020411:583503:5965795965795988702292Hydrogenobaculum sp. HO, complete genomeCRISPR-associated helicase Cas34e-0654.3
NC_020134:2067476:2074883207488320770962214Clostridium stercorarium subsp. stercorarium DSM 8532, completeCRISPR-associated helicase Cas37e-0653.5