Pre_GI Gene

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Host: NC_020134 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_020134:2067476 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
206747620689391464hypothetical proteinBLASTP
20690002069554555hypothetical protein
20698292070260432hypothetical protein
20705332070931399CRISPR associated protein Cas6QuickGO ontologyBLASTP
207094720726561710CRISPR-associated protein Cas8a1Cst1 subtype I-BTNEAPQuickGO ontologyBLASTP
20726492073572924CRISPR-associated protein Cas7Cst2DevR subtype I-BTNEAPQuickGO ontologyBLASTP
20736372074347711crispr-associated protein Cas5 tneap subtypeQuickGO ontologyBLASTP
207488320770962214CRISPR-associated helicase Cas3QuickGO ontologyBLASTP
20770882077225138hypothetical protein
207742520803852961endoglucanase ZQuickGO ontologyBLASTP
208052820832722745exoglucanase-2QuickGO ontologyBLASTP
208407920852991221hypothetical proteinBLASTP
208531320886003288hypothetical proteinBLASTP
20885972089244648hypothetical protein
208923720906731437hypothetical protein