Pre_GI: BLASTP Hits

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Query: NC_009092:521519:542808 Shewanella loihica PV-4, complete genome

Start: 542808, End: 543425, Length: 618

Host Lineage: Shewanella loihica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean. Psychrotolerant bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella loihica is a psychrotolerant deep sea bacterium. This organism is able to reduce iron, manganese and uranium and may be useful for bioremediation at low temperatures.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010506:5195000:520433252043325204952621Shewanella woodyi ATCC 51908, complete genomecold-shock DNA-binding domain protein3e-52204
NC_004347:718091:748237748237748848612Shewanella oneidensis MR-1, complete genomecold shock domain family protein3e-50197
NC_012108:2542328:255697125569712557495525Desulfobacterium autotrophicum HRM2, complete genomeputative cold shock domain family protein2e-28125
NC_006138:225832:252701252701253288588Desulfotalea psychrophila LSv54, complete genomehypothetical protein3e-27121
NC_007948:3541987:355141135514113551992582Polaromonas sp. JS666, complete genomecold-shock DNA-binding domain protein6e-27120
NC_006513:1695487:170804017080401708609570Azoarcus sp. EbN1, complete genomeprobable cold shock family protein3e-25114
NC_004603:1897532:190226619022661902760495Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein4e-21100
NC_004459:2443000:257510025751002575567468Vibrio vulnificus CMCP6 chromosome I, complete sequenceCold shock domain family protein1e-2099.4
NC_008751:1043269:108077710807771081310534Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeputative cold-shock DNA-binding domain protein2e-2099
NC_013194:4034854:403871240387124039014303Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completecold-shock DNA-binding protein family1e-1892.8
NC_013173:2884887:289990228999022900072171Desulfomicrobium baculatum DSM 4028, complete genome7e-1580.5
NC_009439:1174432:117984611798461180316471Pseudomonas mendocina ymp, complete genomehypothetical protein5e-1477.8
NC_016147:151224:167376167376167663288Pseudoxanthomonas spadix BD-a59 chromosome, complete genomecold-shock DNA-binding protein family3e-1374.7
NC_017075:2293209:230344023034402303844405Rubrivivax gelatinosus IL144, complete genomehypothetical protein1e-1273.2
NC_002937:1915787:192581719258171926353537Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completecold shock domain protein1e-1273.2
NC_011595:3015895:302083630208363021183348Acinetobacter baumannii AB307-0294, complete genomehypothetical protein7e-0960.5
NC_009085:893601:909395909395909742348Acinetobacter baumannii ATCC 17978, complete genomeExcalibur7e-0960.5
NC_006138:2341975:234197523419752342589615Desulfotalea psychrophila LSv54, complete genomehypothetical protein6e-0857.4
NC_012559:854507:866611866611866865255Laribacter hongkongensis HLHK9, complete genomeProphage MuMc02, nuclease, putative1e-0653.1
NC_015856:1733500:175381917538191754436618Collimonas fungivorans Ter331 chromosome, complete genomecold-shock DNA-binding domain-containing protein3e-0652
NC_012854:1:537053705573204Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505,cold-shock DNA-binding domain protein9e-0650.4