Pre_GI: BLASTP Hits

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Query: NC_009089:428075:433806 Clostridium difficile 630, complete genome

Start: 433806, End: 435782, Length: 1977

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016584:1583685:1594641159464115966622022Desulfosporosinus orientis DSM 765 chromosome, complete genomelipoprotein release ABC transporter permease3e-27124
NC_016048:375676:3875183875183894821965Oscillibacter valericigenes Sjm18-20, complete genomeputative ABC transporter permease protein3e-22107
NC_017200:4632000:4632044463204446339991956Bacillus thuringiensis serovar finitimus YBT-020 chromosome,ABC transporter permease2e-0861.2
NC_017200:4240500:4255424425542442573371914Bacillus thuringiensis serovar finitimus YBT-020 chromosome,ABC transporter permease3e-0860.8
NC_010520:1586000:1589702158970215915911890Clostridium botulinum A3 str. Loch Maree, complete genomepeptide ABC transporter, Pep4E family, permease protein2e-0757.8
NC_009495:1516000:1517266151726615191551890Clostridium botulinum A str. ATCC 3502 chromosome, complete genomepeptide ABC transporter Pep4E family, permease3e-0757.8
NC_015275:443213:4557234557234576301908Clostridium lentocellum DSM 5427 chromosome, complete genomeprotein of unknown function DUF2143e-0654.3
NC_015687:250768:2515252515252534291905Clostridium acetobutylicum DSM 1731 chromosome, complete genomepermease7e-0653.1
NC_003030:249648:2515272515272534311905Clostridium acetobutylicum ATCC 824, complete genomePredicted permease7e-0653.1