Pre_GI: BLASTP Hits

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Query: NC_009089:3142976:3159561 Clostridium difficile 630, complete genome

Start: 3159561, End: 3160625, Length: 1065

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013316:3056925:3073334307333430743981065Clostridium difficile R20291, complete genomehypothetical protein1e-169596
NC_010376:1175916:1194134119413411951801047Finegoldia magna ATCC 29328, complete genomehypothetical protein2e-23110
NC_015975:752927:7539527539527549711020Lactobacillus ruminis ATCC 27782 chromosome, complete genomehypothetical protein2e-1583.6
NC_015697:321311:3358823358823368951014Lactobacillus reuteri SD2112 chromosome, complete genomeintegral membrane protein3e-1583.2
NC_015978:996933:1014340101434010153531014Lactobacillus sanfranciscensis TMW 1.1304 chromosome, completehypothetical protein5e-1582.4
NC_007929:428743:4309604309604319791020Lactobacillus salivarius subsp. salivarius UCC118, complete genomeHypothetical secreted protein7e-1581.6
NC_009513:1363987:1375717137571713767301014Lactobacillus reuteri F275, complete genomeconserved hypothetical protein 3747e-1478.6
NC_014334:769205:7881277881277891401014Lactobacillus casei str. Zhang chromosome, complete genomeputative integral membrane protein6e-1375.1
NC_008530:1551356:1570072157007215710881017Lactobacillus gasseri ATCC 33323, complete genomePredicted integral membrane protein2e-1273.9
NC_015428:1668465:1682850168285016838811032Lactobacillus buchneri NRRL B-30929 chromosome, complete genomeLysylphosphatidylglycerol synthetase/UPF01042e-1273.6
NC_013199:811929:8310298310298320391011Lactobacillus rhamnosus Lc 705, complete genomeconserved hypothetical protein (integral membrane protein by homology)4e-1272.4
NC_005362:1651767:1674014167401416750301017Lactobacillus johnsonii NCC 533, complete genomehypothetical protein1e-1170.9
NC_015214:437733:4609324609324619571026Lactobacillus acidophilus 30SC chromosome, complete genomeintegral membrane protein1e-1170.9
NC_013504:1468227:1483851148385114848671017Lactobacillus johnsonii FI9785 chromosome, complete genomehypothetical protein2e-1170.5
NC_008525:664500:6701556701556711891035Pediococcus pentosaceus ATCC 25745, complete genomePredicted integral membrane protein4e-1169.3
NC_014106:419511:4384864384864395111026Lactobacillus crispatus ST1, complete genomeIntegral membrane protein6e-1168.9
NC_008528:610070:6124076124076134351029Oenococcus oeni PSU-1, complete genomePredicted integral membrane protein8e-1168.2
NC_016605:1177485:1193256119325611942781023Pediococcus claussenii ATCC BAA-344 chromosome, complete genomehypothetical protein3e-1066.6
NC_014724:439594:4611834611834622081026Lactobacillus amylovorus GRL 1112 chromosome, complete genomeintegral membrane protein7e-0962
NC_010080:445398:4612654612654622871023Lactobacillus helveticus DPC 4571, complete genomeputative membrane protein8e-0961.6
NC_018528:446610:4669684669684679931026Lactobacillus helveticus R0052 chromosome, complete genomeintegral membrane protein2e-0860.5
NC_006814:403723:4272794272794283041026Lactobacillus acidophilus NCFM, complete genomehypothetical protein5e-0858.9
NC_008497:1498430:1509273150927315103071035Lactobacillus brevis ATCC 367, complete genomePredicted integral membrane protein2e-0757.4
NC_015602:117939:1354611354611364831023Lactobacillus kefiranofaciens ZW3 chromosome, complete genomeintegral membrane protein3e-0756.2
NC_010483:1441614:1451566145156614525731008Thermotoga sp. RQ2, complete genomehypothetical protein2e-0653.9