Pre_GI: BLASTP Hits

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Query: NC_008261:1048515:1062825 Clostridium perfringens ATCC 13124, complete genome

Start: 1062825, End: 1063601, Length: 777

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:1091766:110605011060501106865816Clostridium perfringens str. 13, complete genomeethanolamine utilization cobalamin adenosyltransferase2e-146518
NC_017179:2067015:208080820808082081569762Clostridium difficile BI1, complete genomeethanolamine/propanediol utilization cobalamin adenosyltransferase5e-86317
NC_013315:2059007:207280020728002073561762Clostridium difficile CD196 chromosome, complete genomeethanolamine/propanediol utilization cobalamin adenosyltransferase5e-86317
NC_015275:4493500:449759644975964498363768Clostridium lentocellum DSM 5427 chromosome, complete genomecobalamin adenosyltransferase4e-72271
NC_004557:2289135:229703222970322297850819Clostridium tetani E88, complete genomecobalamin adenosyltransferase6e-58224
NC_009633:286677:300284300284301057774Alkaliphilus metalliredigens QYMF chromosome, complete genomecobalamin adenosyltransferase1e-51202
NC_018870:705900:728437728437729156720Thermacetogenium phaeum DSM 12270 chromosome, complete genomecobalamin adenosyltransferase3e-42171
NC_017243:1813158:182308818230881823849762Brachyspira intermedia PWS/A chromosome, complete genomeethanolamine utilization cobalamin adenosyltransferase2e-40166
NC_014614:284005:299060299060299824765Clostridium sticklandii, complete genomeputative cobalamin adenosyltransferase in ethanolamine utilization7e-40164
NC_016584:1714507:1721473172147317228521380Desulfosporosinus orientis DSM 765 chromosome, complete genomepropanediol utilization protein3e-36152
NC_009253:1381401:139151813915181392288771Desulfotomaculum reducens MI-1 chromosome, complete genomecobalamin adenosyltransferase1e-35150
NC_016584:1998000:2029244202924420306681425Desulfosporosinus orientis DSM 765 chromosome, complete genomepropanediol utilization protein8e-35147
NC_013192:63111:792097920979991783Leptotrichia buccalis DSM 1135, complete genomecobalamin adenosyltransferase3e-32138
NC_013517:1055854:112725511272551128001747Sebaldella termitidis ATCC 33386, complete genomecobalamin adenosyltransferase2e-31135
NC_009922:868262:879692879692880429738Alkaliphilus oremlandii OhILAs, complete genomehypothetical protein2e-0653.1