Pre_GI: BLASTP Hits

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Query: NC_008261:1048515:1056901 Clostridium perfringens ATCC 13124, complete genome

Start: 1056901, End: 1058268, Length: 1368

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:1091766:1100143110014311015101368Clostridium perfringens str. 13, complete genomeethanolamine ammonia lyase heavy chain0947
NC_015275:4493500:4502531450253145038951365Clostridium lentocellum DSM 5427 chromosome, complete genomeEthanolamine ammonia-lyase0842
NC_017179:2067015:2075183207518320765471365Clostridium difficile BI1, complete genomeethanolamine ammonia lyase large subunit0826
NC_013315:2059007:2067175206717520685391365Clostridium difficile CD196 chromosome, complete genomeethanolamine/propanediol ammonia-lyase heavy chain0826
NC_004557:2289135:2301843230184323032191377Clostridium tetani E88, complete genomeethanolamine ammonia-lyase heavy chain0771
NC_009633:286677:2948512948512962181368Alkaliphilus metalliredigens QYMF chromosome, complete genomeethanolamine ammonia lyase large subunit0738
NC_013517:1055854:1134833113483311361971365Sebaldella termitidis ATCC 33386, complete genomeEthanolamine ammonia-lyase0729
NC_014614:284005:2937182937182950851368Clostridium sticklandii, complete genomeethanolamine ammonia-lyase, large subunit, heavy chain0718
NC_013192:63111:7131071310726741365Leptotrichia buccalis DSM 1135, complete genomeEthanolamine ammonia lyase large subunit0717
NC_014654:2277461:2290600229060022919641365Halanaerobium sp. 'sapolanicus' chromosome, complete genomeEthanolamine ammonia-lyase0715
NC_009922:868262:8740228740228753891368Alkaliphilus oremlandii OhILAs, complete genomeEthanolamine ammonia lyase large subunit0695
NC_014376:1586649:1595769159576915971481380Clostridium saccharolyticum WM1 chromosome, complete genomeEthanolamine ammonia-lyase0686
NC_009253:1381401:1386640138664013880251386Desulfotomaculum reducens MI-1 chromosome, complete genomeethanolamine ammonia lyase large subunit0683
NC_016584:1998000:2023882202388220252461365Desulfosporosinus orientis DSM 765 chromosome, complete genomeethanolamine ammonia-lyase, large subunit0639
NC_020291:795500:7955557955557969221368Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeethanolamine ammonia-lyase heavy chain3e-178624
NC_012491:5914500:5930544593054459319051362Brevibacillus brevis NBRC 100599, complete genomeprobable ethanolamine ammonia-lyase heavy chain6e-178624
NC_018870:705900:7235747235747249651392Thermacetogenium phaeum DSM 12270 chromosome, complete genomeethanolamine ammonia-lyase heavy chain9e-178623
NC_018515:1663912:1680789168078916821531365Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeethanolamine ammonia-lyase, large subunit5e-171600
NC_016584:1714507:1726633172663317279971365Desulfosporosinus orientis DSM 765 chromosome, complete genomeethanolamine ammonia-lyase, large subunit7e-171600
NC_014019:3543389:3555800355580035571641365Bacillus megaterium QM B1551 chromosome, complete genomeethanolamine ammonia-lyase, large subunit2e-169595
NC_014654:2277461:2289202228920222905841383Halanaerobium sp. 'sapolanicus' chromosome, complete genomeEthanolamine ammonia-lyase3e-167588
NC_010468:1343228:1357697135769713590581362Escherichia coli ATCC 8739, complete genomeEthanolamine ammonia lyase large subunit2e-163575
NC_007651:3719191:3737347373734737387441398Burkholderia thailandensis E264 chromosome I, complete sequenceethanolamine ammonia-lyase, large subunit7e-145513
NC_009937:4090404:4090404409040440917921389Azorhizobium caulinodans ORS 571, complete genomeethanolamine ammonia-lyase large subunit3e-141501
NC_017986:3283433:3300508330050833019021395Pseudomonas putida ND6 chromosome, complete genomeethanolamine ammonia lyase large subunit3e-137488
NC_004129:6240904:6245923624592362473171395Pseudomonas fluorescens Pf-5, complete genomeethanolamine ammonia-lyase, large subunit4e-135481
NC_014734:183214:1868081868081881931386Paludibacter propionicigenes WB4 chromosome, complete genomeethanolamine ammonia-lyase heavy chain2e-134479
NC_015379:6023926:6025626602562660270201395Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,ethanolamine ammonia-lyase, heavy chain4e-133474
NC_016830:5994494:5996067599606759974611395Pseudomonas fluorescens F113 chromosome, complete genomeEutB protein5e-133474
NC_008825:2564965:2581884258188425832931410Methylibium petroleiphilum PM1, complete genomeputative ethanolamine ammonia-lyase heavy chain protein2e-132473
NC_020409:512861:5254235254235269131491Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeEthanolamine ammonia-lyase heavy chain2e-132473
NC_004129:6240904:6243676624367662458712196Pseudomonas fluorescens Pf-5, complete genomeethanolamine ammonia-lyase1e-89330