Pre_GI: BLASTP Hits

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Query: NC_008258:1873805:1889088 Shigella flexneri 5 str. 8401, complete genome

Start: 1889088, End: 1889462, Length: 375

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011205:1345511:134945313494531349827375Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein7e-42169
NC_011147:1057259:106120110612011061575375Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein3e-39160
NC_006511:1063249:106719110671911067565375Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative cation resistance protein3e-39160
NC_011080:1944226:197516319751631975537375Salmonella enterica subsp. enterica serovar Newport str. SL254,copper resistance protein CopC4e-39159
NC_011083:1993672:201856320185632018937375Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,copper resistance protein CopC6e-39159
NC_010102:1137247:114118911411891141563375Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-38158
NC_003197:1945858:196954219695421969916375Salmonella typhimurium LT2, complete genomeputative copper resistance protein1e-38158
NC_011094:1923870:194810319481031948477375Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein1e-38158
NC_016856:1957263:198094719809471981321375Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein1e-38158
NC_016860:1943203:196508319650831965457375Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-38158
NC_016863:1905454:192913819291381929512375Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein1e-38158
NC_017046:1902788:192647319264731926853381Salmonella enterica subsp. enterica serovar Typhimurium str. 798cation resistance protein1e-38157
NC_016857:1903426:192711019271101927490381Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein1e-38157
NC_016810:1903426:192711019271101927490381Salmonella enterica subsp. enterica serovar Typhimurium strputative cation resistance protein1e-38157
NC_012125:1897611:190154519015451901925381Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein1e-38157
NC_011294:1220526:122446212244621224842381Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-38157
NC_013850:1887556:189148518914851891859375Klebsiella variicola At-22 chromosome, complete genomecopper resistance protein CopC2e-23107
NC_010159:1668795:167639316763931676779387Yersinia pestis Angola, complete genomecopper resistance protein CopC4e-22103
NC_010634:2004653:201292620129262013312387Yersinia pseudotuberculosis PB1/+, complete genomecopper resistance protein CopC4e-22103
NC_015566:2039431:204560720456072045990384Serratia sp. AS12 chromosome, complete genomecopper resistance protein CopC5e-2199.8
NC_015567:2039443:204561920456192046002384Serratia sp. AS9 chromosome, complete genomecopper resistance protein CopC5e-2199.8
NC_015061:3111211:313078431307843131167384Rahnella sp. Y9602 chromosome, complete genomecopper resistance protein CopC9e-1785.5
NC_016818:3114460:313135231313523131735384Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completecopper resistance protein CopC-like protein1e-1685.1
NC_011894:6708970:672760667276066727965360Methylobacterium nodulans ORS 2060, complete genomecopper resistance protein CopC7e-1579.3
NC_016816:2073677:207678520767852077159375Pantoea ananatis LMG 5342, complete genomecopper resistance protein CopC2e-1374.7
NC_012912:2553391:256453625645362564916381Dickeya zeae Ech1591, complete genomecopper resistance protein CopC1e-1168.6
NC_015186:2884866:289270228927022893070369Acidiphilium multivorum AIU301, complete genomeputative copper resistance protein4e-1166.6
NC_010678:900389:932054932054932422369Ralstonia pickettii 12J chromosome 2, complete sequencecopper resistance protein CopC8e-1165.9
NC_011748:3958572:397205939720593972439381Escherichia coli 55989, complete genomeCopper resistance protein C precursor5e-0856.2
NC_009778:4188000:421772842177284218108381Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein5e-0856.2
CU928145:3958572:397205939720593972439381Escherichia coli 55989 chromosome, complete genomeCopper resistance protein C precursor5e-0856.2
NC_016589:2824164:285857028585702858944375Burkholderia sp. YI23 chromosome 1, complete sequencecopper resistance protein CopC4e-0650.4