Pre_GI: BLASTP Hits

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Query: NC_007952:3196085:3222380 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 3222380, End: 3224818, Length: 2439

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:3193490:3215716321571632183162601Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein9e-147521
NC_009439:3770282:3777612377761237800982487Pseudomonas mendocina ymp, complete genomehypothetical protein3e-144513
NC_008463:2467219:2485638248563824881362499Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein9e-144511
NC_009656:4527457:4566763456676345696272865Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein3e-139496
NC_010002:5691968:5703969570396957063652397Delftia acidovorans SPH-1, complete genomehypothetical protein9e-126451
NC_014910:1200605:1213322121332212152201899Alicycliphilus denitrificans BC chromosome, complete genome2e-109397
NC_012918:1444333:1452863145286314553252463Geobacter sp. M21 chromosome, complete genomehypothetical protein1e-102374
NC_007493:1929000:1936160193616019386972538Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceplasma membrane H+-transporting two-sector ATPase, C subunit8e-82305
NC_016010:1822212:1846235184623518475571323Xanthomonas axonopodis pv. citrumelo F1 chromosome, completehypothetical protein4e-74280
NC_015580:1584078:1593435159343515959542520Novosphingobium sp. PP1Y, complete genomeplasma membrane H+-transporting two-sector ATPase, C subunit8e-68259
NC_017047:2042346:2054994205499420573002307Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein7e-66252
NC_019673:6259229:6259229625922962614902262Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-65251
NC_016612:28451:4413244132464412310Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein5e-63243
NC_006370:1810842:1826082182608218283912310Photobacterium profundum SS9 chromosome 1, complete sequencehypothetical protein9e-63242
NC_014217:2020737:2033955203395520371133159Starkeya novella DSM 506 chromosome, complete genomePeptidoglycan-binding domain 1 protein3e-62240
NC_008435:2658986:2686492268649226888912400Rhodopseudomonas palustris BisA53, complete genomehypothetical protein3e-53211
NC_014500:3175283:3191323319132331927381416Dickeya dadantii 3937 chromosome, complete genomehypothetical protein2e-42175
NC_017075:1869326:1871590187159018735331944Rubrivivax gelatinosus IL144, complete genomehypothetical protein9e-25116
NC_007333:39579:7545175451795214071Thermobifida fusca YX, complete genomehypothetical protein1e-20102