Pre_GI: BLASTP Hits

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Query: NC_007951:4608560:4621065 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 4621065, End: 4622171, Length: 1107

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014618:1103239:1128284112828411293691086Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein1e-74280
NC_017075:3165858:3185220318522031862961077Rubrivivax gelatinosus IL144, complete genometranscriptional regulator, Xre family3e-71269
NC_009832:358291:3699623699623710441083Serratia proteamaculans 568, complete genomeprotein of unknown function DUF9555e-63241
NC_011083:4547825:4589922458992245910041083Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,plasmid maintenance system antidote protein, XRE family7e-60231
NC_018678:87064:8898188981900721092Alteromonas macleodii str. 'English Channel 673' chromosome,hypothetical protein6e-58224
NC_009655:1357486:1367284136728413682971014Actinobacillus succinogenes 130Z chromosome, complete genomeXRE family plasmid maintenance system antidote protein2e-44179
NC_011138:3881446:3901794390179439029091116Alteromonas macleodii 'Deep ecotype', complete genomePlasmid maintenance system antidote protein3e-42172
NC_013929:10950:1583815838169831146Streptomyces scabiei 87.22 chromosome, complete genomeDNA-binding protein5e-38158
NC_012778:229503:2377682377682388201053Eubacterium eligens ATCC 27750, complete genomehypothetical protein4e-35149
NC_015514:3508022:3528914352891435300111098Cellulomonas fimi ATCC 484 chromosome, complete genomeHigA family addiction module antidote protein8e-24111
NC_013740:842841:8727948727948738461053Acidaminococcus fermentans DSM 20731, complete genomeplasmid maintenance system antidote protein, XRE family6e-23108
NC_015519:270637:2830682830682841591092Tepidanaerobacter sp. Re1 chromosome, complete genomeplasmid maintenance system antidote protein, XRE family2e-21103
NC_014011:1354261:1358334135833413594551122Aminobacterium colombiense DSM 12261 chromosome, complete genomeplasmid maintenance system antidote protein, XRE family4e-21102
NC_011899:2165814:217760721776072178293687Halothermothrix orenii H 168, complete genomeplasmid maintenance system antidote protein, XRE family1e-1997.4
NC_011884:1665888:1676795167679516778711077Cyanothece sp. PCC 7425, complete genomeplasmid maintenance system antidote protein, XRE family8e-1994.7
NC_014319:587977:5901115901115911811071Leuconostoc gasicomitatum LMG 18811, complete genomeDNA-binding protein1e-1894.4
NC_013410:2519441:254847725484772549475999Fibrobacter succinogenes subsp. succinogenes S85 chromosome,XRE family plasmid maintenance system antidote protein3e-1893.2
NC_014722:846084:8924778924778936491173Burkholderia rhizoxinica HKI 454, complete genomevirulence-associated protein I2e-1790.5
NC_010682:3313944:3320844332084433219741131Ralstonia pickettii 12J chromosome 1, complete sequenceplasmid maintenance system antidote protein, XRE family3e-1376.6
NC_014814:1397429:1409231140923114103311101Mycobacterium sp. Spyr1 chromosome, complete genomeaddiction module antidote protein, HigA family5e-1375.9
NC_011886:1176238:1184059118405911851441086Arthrobacter chlorophenolicus A6, complete genomeplasmid maintenance system antidote protein, XRE family8e-1375.1
NC_008278:5399715:5411866541186654129421077Frankia alni ACN14a, complete genomePutative HTH-type transcriptional regulator9e-1271.6
NC_009256:458649:4772684772684784011134Burkholderia vietnamiensis G4 chromosome 1, complete sequenceXRE family plasmid maintenance system antidote protein2e-1067.4
NC_014816:1592799:1600530160053016017051176Asticcacaulis excentricus CB 48 chromosome 1, complete sequencehelix-turn-helix domain protein4e-0756.2