Pre_GI: BLASTP Hits

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Query: NC_007613:1353500:1365239 Shigella boydii Sb227, complete genome

Start: 1365239, End: 1366423, Length: 1185

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010658:1772994:1777354177735417785381185Shigella boydii CDC 3083-94, complete genomephage tail sheath protein0815
NC_016816:674171:6741716741716753401170Pantoea ananatis LMG 5342, complete genometail sheath protein1e-102373
NC_015856:1182974:1182974118297411841461173Collimonas fungivorans Ter331 chromosome, complete genomemajor tail sheath protein1e-102373
NC_020064:871338:8858658858658870341170Serratia marcescens FGI94, complete genomephage tail sheath protein FI2e-101369
NC_014228:3022903:3032510303251030336821173Xenorhabdus nematophila ATCC 19061, complete genomeMajor tail sheath protein (Protein FI)2e-100365
NC_012880:2480000:2483937248393724851061170Dickeya dadantii Ech703, complete genometail sheath protein2e-99362
NC_009648:3803622:3808732380873238099131182Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage tail sheath9e-99360
NC_016845:4077293:4078474407847440796551182Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative prophage tail sheath2e-98359
NC_003198:4453457:4480094448009444812661173Salmonella enterica subsp. enterica serovar Typhi str. CT18,probable major tail sheath protein4e-98358
NC_020181:5130513:5171402517140251725801179Enterobacter aerogenes EA1509E, complete genomePhage tail sheath monomer1e-97357
NC_014837:3739408:3759237375923737604061170Pantoea sp. At-9b chromosome, complete genometail sheath protein1e-95350
NC_015563:4959843:4961295496129549624911197Delftia sp. Cs1-4 chromosome, complete genometail sheath protein2e-95349
NC_006155:2084669:2102627210262721037961170Yersinia pseudotuberculosis IP 32953, complete genomeputative tail sheath protein (P2 and 186 bacteriophage)3e-95348
NC_012724:1914740:1918981191898119201681188Burkholderia glumae BGR1 chromosome 1, complete genomehypothetical protein9e-94343
NC_008781:3508784:3510544351054435117191176Polaromonas naphthalenivorans CJ2, complete genomephage tail sheath protein1e-93343
NC_012560:3771861:3790949379094937921391191Azotobacter vinelandii DJ, complete genomePhage P2 tail sheath FI-like protein5e-93341
NC_021150:3771860:3790948379094837921381191Azotobacter vinelandii CA6, complete genomePhage P2 tail sheath FI-like protein5e-93341
NC_017059:3688688:3701627370162737028081182Rhodospirillum photometricum DSM 122, complete genomePhage tail sheath protein2e-91335
NC_012779:3016327:3018555301855530197331179Edwardsiella ictaluri 93-146, complete genomephage tail sheath protein2e-89329
NC_007963:1552761:1572930157293015741141185Chromohalobacter salexigens DSM 3043, complete genomephage tail sheath protein1e-87323
NC_017505:1013311:1017178101717810183651188Neisseria meningitidis alpha710 chromosome, complete genomeMajor tail sheath protein FI1e-51203
NC_010981:1371265:1406693140669314078711179Wolbachia pipientis, complete genomePhage major tail sheath protein2e-50199
NC_010981:468465:4774204774204785981179Wolbachia pipientis, complete genomePhage major tail sheath protein2e-50199
NC_012416:753500:7606677606677618181152Wolbachia sp. wRi, complete genomephage tail sheath protein7e-50198
NC_012881:2310141:2328807232880723299971191Desulfovibrio salexigens DSM 2638, complete genometail sheath protein2e-44180
NC_004578:3817330:3837522383752238386851164Pseudomonas syringae pv. tomato str. DC3000, complete genomemajor tail sheath protein1e-37157
NC_016830:4999946:5022154502215450233171164Pseudomonas fluorescens F113 chromosome, complete genomePhage tail sheath monomer4e-36152
NC_010161:1324381:1349942134994213512311290Bartonella tribocorum CIP 105476, complete genomephage-related tail sheath protein7e-34145
CP002797:1960000:1970867197086719723691503Escherichia coli NA114, complete genomeputative phage tail sheath protein2e-32140
NC_009801:2159123:2178854217885421803591506Escherichia coli E24377A, complete genomemajor tail sheath protein8e-32138
NC_011750:2009889:2024306202430620257331428Escherichia coli IAI39 chromosome, complete genomeputative phage tail sheath protein1e-31137
NC_008390:2018201:2041567204156720427361170Burkholderia cepacia AMMD chromosome 1, complete sequencephage tail sheath protein8e-28124
NC_014307:1765230:1770800177080017722301431Ralstonia solanacearum CFBP2957 chromosome, complete genomephage tail sheath protein6e-27122
NC_012846:1837924:1863002186300218641981197Bartonella grahamii as4aup, complete genomephage tail sheath protein FI7e-26118
NC_006576:856014:8780518780518794751425Synechococcus elongatus PCC 6301, complete genomehypothetical protein1e-23110
NC_015381:2109500:2109929210992921111611233Burkholderia gladioli BSR3 chromosome 1, complete sequence8e-21101
NC_009832:2211154:223805922380592238805747Serratia proteamaculans 568, complete genomePhage tail sheath protein FI-like protein8e-1478.6
NC_002978:549454:5568955568955580811187Wolbachia endosymbiont of Drosophila melanogaster, complete genome2e-1170.5
NC_015276:2023663:2031270203127020324391170Marinomonas mediterranea MMB-1 chromosome, complete genomehypothetical protein2e-1067
NC_009253:1265474:1288031128803112894881458Desulfotomaculum reducens MI-1 chromosome, complete genomehypothetical protein4e-0859.3
NC_015386:150000:4786478659911206Treponema succinifaciens DSM 2489 plasmid pTRESU01, completetail sheath protein6e-0858.9
NC_009850:1651410:1661742166174216629261185Arcobacter butzleri RM4018, complete genomephage tail sheath protein7e-0755.5