Pre_GI: BLASTP Hits

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Query: NC_007606:4182188:4201419 Shigella dysenteriae Sd197, complete genome

Start: 4201419, End: 4201622, Length: 204

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008253:4735418:4737132473713247406473516Escherichia coli 536, complete genomeputative superfamily I DNA helicases1e-26118
NC_007946:4779745:4780097478009747836123516Escherichia coli UTI89, complete genomeputative DNA helicase, superfamily I1e-26118
NC_007384:3383983:3396289339628933998043516Shigella sonnei Ss046, complete genomeputative superfamily I DNA helicases3e-26117
NC_004741:3041294:3046628304662830501433516Shigella flexneri 2a str. 2457T, complete genomeputative superfamily I DNA helicase3e-26117
NC_011748:4792703:4802695480269548062103516Escherichia coli 55989, complete genomePutative superfamily I DNA helicase3e-26117
NC_004337:3049118:3054452305445230579673516Shigella flexneri 2a str. 301, complete genomeputative superfamily I DNA helicase3e-26117
CU928145:4792703:4802695480269548062103516Escherichia coli 55989 chromosome, complete genomePutative superfamily I DNA helicase3e-26117
NC_016822:3420826:3422873342287334263883516Shigella sonnei 53G, complete genomesuperfamily I DNA helicase3e-26117
NC_017328:3088907:3094241309424130977563516Shigella flexneri 2002017 chromosome, complete genomeputative superfamily I DNA helicase3e-26117
NC_011750:4775770:4796684479668448002113528Escherichia coli IAI39 chromosome, complete genomeputative superfamily I DNA helicase4e-26116
NC_010102:4745949:4750883475088347543983516Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-1993.6
NC_015761:4355335:4360324436032443638393516Salmonella bongori NCTC 12419, complete genomehypothetical protein1e-1892
NC_009792:3225965:3236534323653432400493516Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein6e-1889.4
NC_015224:610807:6146146146146164041791Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative superfamily I DNA helicase1e-1788.6
NC_004556:1641985:1660432166043216640043573Xylella fastidiosa Temecula1, complete genomeDNA helicase2e-0961.2