Pre_GI: BLASTP Hits

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Query: NC_007384:4095016:4103622 Shigella sonnei Ss046, complete genome

Start: 4103622, End: 4105289, Length: 1668

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3935185:3954100395410039557671668Shigella flexneri 2002017 chromosome, complete genomeTransposon Tn7 transposition protein tnsC01103
NC_014844:2721746:2731960273196027336001641Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeTn7 transposition regulator TnsC3e-160565
NC_015851:89006:1041281041281057831656Acidithiobacillus caldus SM-1 megaplasmid, complete sequencetransposon Tn7 transposition protein TnsC7e-155547
NC_006512:2789098:2810401281040128120681668Idiomarina loihiensis L2TR, complete genomeTransposon Tn7 transposition protein tnsC5e-144511
NC_009052:5089963:5098929509892951005871659Shewanella baltica OS155, complete genometransposon Tn7 transposition protein TnsC1e-140500
NC_015572:4916430:4931171493117149328261656Methylomonas methanica MC09 chromosome, complete genometransposon Tn7 transposition protein TnsC6e-140498
NC_010995:4525119:4547124454712445487431620Cellvibrio japonicus Ueda107, complete genomeTn7-Cj, transposition protein TnsC2e-115416
NC_015740:4508375:4516670451667045182801611Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completetransporter, AcrB/AcrD/AcrF family3e-111402
NC_014394:1325616:1327371132737113289901620Gallionella capsiferriformans ES-2 chromosome, complete genomeTn5468, transposition protein C6e-89328
NC_013921:1915377:1922436192243619240971662Thermoanaerobacter italicus Ab9 chromosome, complete genomeTn7-like transposition protein C8e-87321
NC_015958:2174731:2182788218278821844521665Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeTn7-like transposition protein C2e-86320
NC_014657:2127500:2134407213440721360681662Caldicellulosiruptor owensensis OL chromosome, complete genometn7-like transposition protein c5e-81302
NC_015497:4564339:4573080457308045746721593Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeATP-binding protein1e-77290
NC_010718:237962:2589382589382606261689Natranaerobius thermophilus JW/NM-WN-LF, complete genomeAAA ATPase1e-74280
NC_007492:6372900:6413432641343264148981467Pseudomonas fluorescens PfO-1, complete genomeTn7-like transposition protein C6e-67255
NC_011206:123791:1350711350711367501680Acidithiobacillus ferrooxidans ATCC 53993, complete genomeTn7-like transposition protein C2e-65250
NC_015733:5955467:5968489596848959699371449Pseudomonas putida S16 chromosome, complete genomeTn7-like transposition protein C6e-60232
NC_010501:5735656:5749100574910057505031404Pseudomonas putida W619, complete genomeTn7-like transposition protein C2e-58226
NC_010625:1602191:1617224161722416188461623Burkholderia phymatum STM815 plasmid pBPHY01, complete sequenceTn7-like transposition protein C2e-55217
NC_014118:987889:1027036102703610285861551Burkholderia sp. CCGE1002 chromosome chromosome 2, completeTn7-like transposition protein C2e-48194
NC_009838:81913:1121161121161135641449Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequenceTnsC3e-35150
CU928145:3983432:3996645399664539980931449Escherichia coli 55989 chromosome, complete genomeTn7-like transposition protein TnsC3e-35150
NC_011748:3983432:3996645399664539980931449Escherichia coli 55989, complete genomeTn7-like transposition protein TnsC3e-35150
NC_014121:5000069:5013136501313650145841449Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeTn7-like transposition protein TnsC3e-35150
NC_010634:4463727:4483969448396944853931425Yersinia pseudotuberculosis PB1/+, complete genomeAAA ATPase3e-34146
NC_007974:2048000:205673420567342057537804Ralstonia metallidurans CH34 chromosome 2, complete sequenceTn7-like transposition protein C6e-23109
NC_016616:1091606:1123615112361511251141500Dechlorosoma suillum PS chromosome, complete genomehypothetical protein2e-21103
NC_009659:3815966:3835332383533238365911260Janthinobacterium sp. Marseille chromosome, complete genomeTn7-like transposition protein C4e-1996.7
NC_007908:1252189:1262633126263312640901458Rhodoferax ferrireducens T118, complete genomehypothetical protein1e-1791.7
NC_009349:3396:1020410204116431440Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completeTn7-like transposition protein C3e-1687
NC_010623:2057467:2059973205997320616221650Burkholderia phymatum STM815 chromosome 2, complete sequencehypothetical protein5e-1686.3
NC_014394:3114648:3127088312708831283801293Gallionella capsiferriformans ES-2 chromosome, complete genomeTn7-like transposition protein C3e-1480.5
NC_007974:2048000:205505620550562055571516Ralstonia metallidurans CH34 chromosome 2, complete sequencetransposon Tn7 transposition protein TnsC5e-0963.2
NC_014539:1:2036520365213811017Burkholderia sp. CCGE1003 chromosome 1, complete sequenceTniB family protein2e-0654.3