Pre_GI: BLASTP Hits

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Query: NC_007384:278810:294474 Shigella sonnei Ss046, complete genome

Start: 294474, End: 295241, Length: 768

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011745:258727:278723278723279490768Escherichia coli ED1a chromosome, complete genomeputative glutamine amidotransferases class-II2e-152537
NC_011751:256830:279042279042279809768Escherichia coli UMN026 chromosome, complete genomeputative glutamine amidotransferases class-II2e-152537
NC_002695:261235:282294282294283061768Escherichia coli O157:H7 str. Sakai, complete genomeputative amidotransferase3e-151533
NC_011742:258746:276824276824277591768Escherichia coli S88 chromosome, complete genomeclass-II glutamine amidotransferase6e-151533
NC_008563:258725:276804276804277571768Escherichia coli APEC O1, complete genomeputative amidotransferase6e-151533
NC_008253:257059:276150276150276917768Escherichia coli 536, complete genomeputative glutamine amidotransferase1e-150532
NC_007946:258747:276810276810277592783Escherichia coli UTI89, complete genomeputative amidotransferase1e-150531
NC_016831:2667561:266756126675612668328768Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-144512
NC_020260:3004500:302652830265283027295768Cronobacter sakazakii Sp291, complete genomeglutamine amidotransferase YafJ7e-142502
NC_017154:3576256:360048836004883601261774Yersinia pestis D106004 chromosome, complete genomehypothetical protein3e-133474
NC_014029:3633955:365818736581873658960774Yersinia pestis Z176003 chromosome, complete genomehypothetical protein3e-133474
NC_009708:3542336:356656835665683567341774Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeclass II glutamine amidotransferases domain-containing protein9e-133472
NC_004547:3866439:389237338923733893140768Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein2e-128458
NC_010501:4311873:432420843242084324981774Pseudomonas putida W619, complete genomeglutamine amidotransferase class-II6e-84310
NC_008752:415599:433416433416434183768Acidovorax avenae subsp. citrulli AAC00-1, complete genomeglutamine amidotransferase, class-II1e-71269
NC_012913:56258:752367523676066831Aggregatibacter aphrophilus NJ8700, complete genomeglutamine amidotransferases class-II3e-71268
NC_015562:1413264:1429269142926914303151047Methanotorris igneus Kol 5 chromosome, complete genomeglutamine amidotransferase class-II1e-40166
NC_014253:142026:1743931743931754751083Methanohalobium evestigatum Z-7303 chromosome, complete genomeglutamine amidotransferase class-II3e-37155
NC_014253:142026:173388173388174251864Methanohalobium evestigatum Z-7303 chromosome, complete genomeglutamine amidotransferase class-II2e-34146
NC_015680:1315040:133467813346781335643966Pyrococcus yayanosii CH1 chromosome, complete genomeclass II glutamine amidotransferase domain-containing protein8e-34144
NC_008576:1061171:107578510757851076633849Magnetococcus sp. MC-1, complete genomeglutamine amidotransferase, class-II1e-32139
NC_014910:2779573:2796670279667027977311062Alicycliphilus denitrificans BC chromosome, complete genomeglutamine amidotransferase class-ii2e-30132
NC_014623:7133149:7133149713314971349151767Stigmatella aurantiaca DW4/3-1 chromosome, complete genomehypothetical protein3e-1685.5
NC_009464:650997:686472686472687167696Uncultured methanogenic archaeon RC-I, complete genomepredicted glutamine amidotransferase (class II)2e-1582.8
NC_013665:2132000:215671221567122157410699Methanocella paludicola SANAE, complete genomehypothetical protein3e-1168.9
NC_009675:2623339:262468026246802625444765Anaeromyxobacter sp. Fw109-5 chromosome, complete genomeglutamine amidotransferase3e-0962.4
NC_014666:300571:325619325619326518900Frankia sp. EuI1c chromosome, complete genomeglutamine amidotransferase class-II4e-0858.5