Pre_GI: BLASTP Hits

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Query: NC_007333:2093167:2096318 Thermobifida fusca YX, complete genome

Start: 2096318, End: 2097877, Length: 1560

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010397:815549:8207628207628222821521Mycobacterium abscessus chromosome Chromosome, complete sequenceHypothetical peptidase2e-40167
NC_014210:4377867:4395727439572743971721446Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, PucR family6e-23109
NC_011959:131800:1318001318001333351536Thermomicrobium roseum DSM 5159, complete genomehelix-turn-helix, Fis-type2e-1894.4
NC_020210:1275031:1322407132240713240291623Geobacillus sp. GHH01, complete genometranscriptional regulator PucR family4e-1376.6
NC_007333:39579:6594265942675491608Thermobifida fusca YX, complete genomeputative regulatory protein7e-1375.9
NC_016593:1527456:1541211154121115428391629Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetranscriptional regulator, PucR1e-1171.6
NC_017167:351069:3635273635273654401914Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1transcriptional regulator CdaR2e-1171.2
NC_013411:2236166:2249838224983822514661629Geobacillus sp. Y412MC61, complete genometranscriptional regulator, PucR family4e-1170.1
NC_014915:1376035:1389782138978213914101629Geobacillus sp. Y412MC52 chromosome, complete genometranscriptional regulator, PucR family4e-1170.1
NC_006510:1446490:1460168146016814617961629Geobacillus kaustophilus HTA426, complete genomehypothetical protein3e-1170.1
NC_017955:3057592:3059221305922130607471527Modestobacter marinus, complete genomeCdaR family transcriptional regulator5e-1169.7
NC_011830:1923158:1927219192721919289071689Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, PucR family9e-1168.9
NC_014831:1763408:1778649177864917808502202Thermaerobacter marianensis DSM 12885 chromosome, complete genometranscriptional regulator, PucR family2e-1068.2
NC_015859:1069116:1082172108217210837971626Corynebacterium variabile DSM 44702 chromosome, complete genomeDNA-binding transcription regulator4e-1066.6
NC_009338:817854:8218748218748232381365Mycobacterium gilvum PYR-GCK chromosome, complete genometranscriptional regulator CdaR6e-1065.9
NC_009142:6729512:6756728675672867581311404Saccharopolyspora erythraea NRRL 2338, complete genomeregulatory protein8e-1065.9
NC_016625:171341:1971571971571986261470Burkholderia sp. YI23 chromosome 2, complete sequencePurine catabolism PurC-like protein1e-0965.1
NC_012914:5372712:5382379538237953839921614Paenibacillus sp. JDR-2, complete genometranscriptional regulator, CdaR2e-0964.7
NC_011894:983572:9850809850809865401461Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, PucR family7e-0962.4
NC_009633:712500:7266587266587278931236Alkaliphilus metalliredigens QYMF chromosome, complete genomePucR family transcriptional regulator2e-0861.2
NC_015172:951550:9598089598089609861179Syntrophobotulus glycolicus DSM 8271 chromosome, complete genometranscriptional regulator, CdaR2e-0861.2
NC_014829:1475000:1487324148732414889401617Bacillus cellulosilyticus DSM 2522 chromosome, complete genometranscriptional regulator, CdaR3e-0860.8
NC_009454:259022:2753762753762769711596Pelotomaculum thermopropionicum SI, complete genomeregulator of polyketide synthase expression3e-0860.8
NC_014210:2638773:2655191265519126567531563Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, CdaR4e-0860.1
NC_004668:1010610:1030956103095610326261671Enterococcus faecalis V583, complete genomehypothetical protein5e-0859.7
NC_008726:4725389:4729356472935647310441689Mycobacterium vanbaalenii PYR-1, complete genomeputative GAF sensor protein9e-0858.9
NC_008596:4043213:4043213404321340448051593Mycobacterium smegmatis str. MC2 155, complete genomeregulatory protein, putative1e-0758.5
NC_015275:654959:6650106650106661701161Clostridium lentocellum DSM 5427 chromosome, complete genometranscriptional regulator, PucR family1e-0758.2
NC_009328:2378345:2405166240516624068481683Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein3e-0757.4
NC_008578:1827605:1834844183484418366491806Acidothermus cellulolyticus 11B, complete genomepurine catabolism PurC domain protein3e-0757
NC_007644:2205599:2222659222265922243201662Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, CdaR4e-0756.6
NC_015556:1188500:1199599119959912013921794Pseudomonas fulva 12-X chromosome, complete genomeputative transcriptional regulator, PucR family1e-0655.5
NC_018531:2085939:2099840209984021014051566Arthrobacter sp. Rue61a chromosome, complete genomePucR-like transcriptional regulator1e-0655.5
NC_008697:118859:1497331497331514241692Nocardioides sp. JS614 plasmid pNOCA01, complete sequencehypothetical protein3e-0653.5
NC_009922:944538:9500319500319516921662Alkaliphilus oremlandii OhILAs, complete genome4e-0653.5
NC_016604:2944555:2946429294642929481711743Mycobacterium rhodesiae NBB3 chromosome, complete genomehypothetical protein5e-0653.1
NC_015312:3675148:3683986368398636856741689Pseudonocardia dioxanivorans CB1190 chromosome, complete genometranscriptional regulator CdaR7e-0652.4