Pre_GI: BLASTP Hits

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Query: NC_007333:1743890:1823864 Thermobifida fusca YX, complete genome

Start: 1823864, End: 1824865, Length: 1002

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008148:258292:2657872657872670041218Rubrobacter xylanophilus DSM 9941, complete genomeCRISPR-associated protein, TM17916e-21102
NC_014410:937599:961628961628962497870Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,CRISPR-associated RAMP protein, Cmr6 family4e-1685.9
NC_014221:1541517:1555119155511915561591041Truepera radiovictrix DSM 17093 chromosome, complete genomeCRISPR-associated RAMP protein, Cmr6 family1e-1584
NC_011420:3582500:3601311360131136035932283Rhodospirillum centenum SW, complete genomeCRISPR-associated protein, TM1791 family6e-1581.6
NC_011899:1603500:1613638161363816147681131Halothermothrix orenii H 168, complete genomeCRISPR-associated RAMP protein, Cmr6 family2e-1480.1
NC_015387:1898496:1910026191002619111021077Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeCRISPR-associated RAMP protein, Cmr6 family3e-1479.7
NC_013440:1727134:1739644173964417407441101Haliangium ochraceum DSM 14365, complete genomeCRISPR-associated RAMP protein, Cmr6 family3e-1376.3
NC_017095:1573170:158236315823631583160798Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeCRISPR-associated protein, Cmr6 family3e-1376.3
NC_020126:10091703:1010715110107151101082331083Myxococcus stipitatus DSM 14675, complete genomeCRISPR-associated RAMP Cmr6 family protein4e-1375.9
NC_011653:310000:312329312329313075747Thermosipho africanus TCF52B, complete genomecrispr-associated ramp protein, Cmr6 family, putative7e-1375.1
NC_011961:85083:107516107516108463948Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequencecrispr-associated protein, Cmr6 family2e-1273.6
NC_015172:1255956:127718512771851278030846Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeCRISPR-associated RAMP protein, Cmr6 family6e-1168.6
NC_007759:585264:5977045977045990951392Syntrophus aciditrophicus SB, complete genomehypothetical cytosolic protein6e-1065.5
NC_015680:691457:7055027055027065361035Pyrococcus yayanosii CH1 chromosome, complete genomecrispr-associated ramp protein, Cmr6 family1e-0964.3
NC_000917:1666836:1672700167270016737311032Archaeoglobus fulgidus DSM 4304, complete genomehypothetical protein4e-0962.4
NC_014221:1786122:1799777179977718008411065Truepera radiovictrix DSM 17093 chromosome, complete genomeCRISPR-associated RAMP protein, Cmr6 family4e-0652.4