Pre_GI Gene

Some Help

Host: NC_011961 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011961:85083 Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence

Host Lineage: Thermomicrobium roseum; Thermomicrobium; Thermomicrobiaceae; Thermomicrobiales; Chloroflexi; Bacteria

General Information: Thermomicrobium roseum DSM 5159 was isolated from Yellowstone National Park, USA. Obligate thermophile with unusual cell wall structure. Thermomicrobium roseum is a red-pigmented, rod-shaped, Gram-negative extreme thermophile that possesses both an atypical cell wall composition and an unusual cell membrane that is composed entirely of long-chain 1,2-diols. Analyses of environmental sequences from hot spring environments show that T.roseum displays a low quantity but ubiquitous presence in top layers of microbial mats. Few standard housekeeping genes are found on the megaplasmid, however, it does encode a complete system for chemotaxis including both chemosensory components and an entire flagellar apparatus. T. roseum oxidizes CO aerobically, making it the first thermophile known to do so. In addition, is is propose that glycosylation of its carotenoids plays a crucial role in the adaptation of the cell membrane to this bacterium's thermophilic lifestyle. Because T. roseum is a deep-branching member of this phylum, eventhough this species is not photosynthetic, analysis of the genome provides some insight into the origins of photosynthesis in the Chloroflexi.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
83368850861719medium-chain-fatty-acid--CoA ligase Medium-chain acyl-CoA synthetaseQuickGO ontologyBLASTP
85083872962214probable 3-hydroxyacyl-CoA dehydrogenaseQuickGO ontologyBLASTP
8732388093771enoyl-coa hydratase shortchain enoyl-coa hydratase sceh enoyl-coa hydratase 1QuickGO ontologyBLASTP
88190895301341VanW family proteinQuickGO ontologyBLASTP
8958289776195hypothetical protein
9021591165951hypothetical proteinBLASTP
91162944883327hypothetical proteinBLASTP
9577296326555hypothetical protein
9631396813501hypothetical protein
968541010024149hypothetical proteinBLASTP
1010021031822181PglZ domain familyQuickGO ontology
1031791046271449hypothetical proteinBLASTP
1045851057781194cysteine desulfurase m-Nfs1QuickGO ontologyBLASTP
1061811075121332crispr-associated protein familyQuickGO ontologyBLASTP
107516108463948crispr-associated protein Cmr6 familyQuickGO ontologyBLASTP
108456108878423crispr-associated protein Cmr5 familyQuickGO ontologyBLASTP
108893109816924crispr-associated ramp protein Cmr4 familyQuickGO ontologyBLASTP
1098181108881071crispr-associated protein Cmr3 familyQuickGO ontologyBLASTP
1108851126991815crispr-associated protein Crm2 familyQuickGO ontologyBLASTP
1126921138461155crispr-associated protein Cmr1 family putativeQuickGO ontologyBLASTP