Pre_GI: BLASTP Hits

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Query: NC_006905:368942:382199 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 382199, End: 382501, Length: 303

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011147:2496808:251431725143172514619303Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein4e-46182
NC_006511:2501500:251878125187812519083303Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein4e-46182
NC_016860:364981:377118377118377420303Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-45179
NC_012125:1330066:134402713440271344365339Salmonella enterica subsp. enterica serovar Paratyphi C strainbacteriophage ST64T protein 242e-29127
NC_011205:609464:625524625524625856333Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853gp542e-29127
NC_011751:1405381:141741414174141417806393Escherichia coli UMN026 chromosome, complete genomeputative regulatory protein N5e-26116
NC_011601:717072:728867728867729175309Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeearly gene regulator1e-25114
NC_017328:303987:316980316980317288309Shigella flexneri 2002017 chromosome, complete genomeantitermination of transcription at nut site protein2e-25114
NC_009778:2993218:301767730176773018009333Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-1685.1
NC_011740:2072173:211210021121002112525426Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein from phage origin3e-1683.6
NC_013282:1200993:121313312131331213474342Cronobacter turicensis, complete genomeProbable regulatory protein N8e-1579