Pre_GI: BLASTP Hits

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Query: NC_006511:792543:812061 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 812061, End: 812945, Length: 885

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011147:792489:812007812007812891885Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein7e-176616
NC_016832:799764:819213819213820097885Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-172604
NC_003198:2179688:218379321837932184677885Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-172604
NC_004631:799810:819259819259820143885Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-172604
NC_011149:2179592:2183395218339521845971203Salmonella enterica subsp. enterica serovar Agona str. SL483,putative cytoplasmic protein9e-170595
NC_012125:1632150:1654012165401216552141203Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein4e-168590
NC_006905:2235607:2237998223799822392001203Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein2e-167587
NC_008253:2198583:2206255220625522074691215Escherichia coli 536, complete genomeputative cytoplasmic protein8e-111400
NC_004431:2444972:2455722245572224569361215Escherichia coli CFT073, complete genomehypothetical protein2e-110398
NC_004129:5204500:5207174520717452084151242Pseudomonas fluorescens Pf-5, complete genomehypothetical protein2e-45182