Pre_GI: BLASTP Hits

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Query: NC_005126:2063667:2077196 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 2077196, End: 2078293, Length: 1098

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018080:5091772:5128705512870551297841080Pseudomonas aeruginosa DK2 chromosome, complete genometype IV B pilus protein9e-47187
NC_009656:4527457:4609300460930046103791080Pseudomonas aeruginosa PA7 chromosome, complete genometype IV B pilus protein1e-46187
NC_008463:5246954:5283717528371752847961080Pseudomonas aeruginosa UCBPP-PA14, complete genometype IV B pilus Protein2e-46186
NC_004129:5373886:5406087540608754072531167Pseudomonas fluorescens Pf-5, complete genomeintegral membrane protein, putative7e-39161
NC_005126:1223042:1234512123451212355971086Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-38160
NC_007950:185500:1985251985251995981074Polaromonas sp. JS666 plasmid 2, complete sequencetype II secretion system protein2e-34146
NC_012214:3502992:3511151351115135122601110Erwinia pyrifoliae Ep1/96, complete genometype IV pilus integral membrane protein2e-33143
NC_007507:11000:1735117351184481098Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,putative PilR-like integral membrane protein3e-31135
NC_009708:4182460:4204699420469942057991101Yersinia pseudotuberculosis IP 31758 chromosome, complete genometype IV pilus biogenesis protein PilR5e-30132
NC_015850:1155376:1179517117951711806171101Acidithiobacillus caldus SM-1 chromosome, complete genomeintegral membrane protein3e-23109
NC_012751:942315:9459009459009469641065Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completePilR type IV pilus biosynthesis protein6e-23108
NC_020063:528296:5427715427715438051035Enterobacteriaceae bacterium strain FGI 57, complete genometype II secretory pathway, component PulF8e-1891.7
NC_017047:4379989:4392990439299043940361047Rahnella aquatilis HX2 chromosome, complete genometype II secretion system F domain-containing protein5e-1582.4
NC_015061:4286000:4299104429910443001501047Rahnella sp. Y9602 chromosome, complete genomeType II secretion system F domain protein5e-1582.4
NC_014618:1040381:1059494105949410605191026Enterobacter cloacae SCF1 chromosome, complete genometype II secretion system F domain-containing protein8e-1581.6
NC_004547:611178:6111786111786122151038Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative Type IV pilus protein1e-1481.3
NC_009457:351512:3883813883813894031023Vibrio cholerae O395 chromosome 2, complete sequencetoxin co-regulated pilus biosynthesis protein E2e-1067
NC_012668:2744393:2765141276514127661631023Vibrio cholerae MJ-1236 chromosome 1, complete sequencetoxin co-regulated pilus biosynthesis protein E anchors TcpT to membrane2e-1067
NC_015138:4584846:4604256460425646055391284Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeType II secretion system F domain-containing protein1e-0654.3
NC_008752:4589119:4611528461152846128111284Acidovorax avenae subsp. citrulli AAC00-1, complete genometype II secretion system protein2e-0653.9
NC_010682:1624985:1630239163023916313121074Ralstonia pickettii 12J chromosome 1, complete sequencetype II secretion system protein3e-0653.1
NC_015761:299386:3378873378873389151029Salmonella bongori NCTC 12419, complete genomepilin-related type II secretion protein1e-0551.6