Pre_GI: BLASTP Hits

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Query: NC_005126:1223042:1234512 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 1234512, End: 1235597, Length: 1086

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009708:4182460:4204699420469942057991101Yersinia pseudotuberculosis IP 31758 chromosome, complete genometype IV pilus biogenesis protein PilR1e-101370
NC_005126:2063667:2077196207719620782931098Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein2e-46186
NC_012214:3502992:3511151351115135122601110Erwinia pyrifoliae Ep1/96, complete genometype IV pilus integral membrane protein2e-45183
NC_018080:5091772:5128705512870551297841080Pseudomonas aeruginosa DK2 chromosome, complete genometype IV B pilus protein9e-45181
NC_009656:4527457:4609300460930046103791080Pseudomonas aeruginosa PA7 chromosome, complete genometype IV B pilus protein1e-44181
NC_008463:5246954:5283717528371752847961080Pseudomonas aeruginosa UCBPP-PA14, complete genometype IV B pilus Protein1e-44180
NC_004129:5373886:5406087540608754072531167Pseudomonas fluorescens Pf-5, complete genomeintegral membrane protein, putative1e-38160
NC_007507:11000:1735117351184481098Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,putative PilR-like integral membrane protein3e-31136
NC_015850:1155376:1179517117951711806171101Acidithiobacillus caldus SM-1 chromosome, complete genomeintegral membrane protein2e-30133
NC_004547:611178:6111786111786122151038Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative Type IV pilus protein8e-26118
NC_012751:942315:9459009459009469641065Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completePilR type IV pilus biosynthesis protein3e-23109
NC_007950:185500:1985251985251995981074Polaromonas sp. JS666 plasmid 2, complete sequencetype II secretion system protein1e-21103
NC_010682:1624985:1630239163023916313121074Ralstonia pickettii 12J chromosome 1, complete sequencetype II secretion system protein1e-1480.9
NC_020063:528296:5427715427715438051035Enterobacteriaceae bacterium strain FGI 57, complete genometype II secretory pathway, component PulF5e-1168.9
NC_014618:1040381:1059494105949410605191026Enterobacter cloacae SCF1 chromosome, complete genometype II secretion system F domain-containing protein3e-0963.2
NC_012668:2744393:2765141276514127661631023Vibrio cholerae MJ-1236 chromosome 1, complete sequencetoxin co-regulated pilus biosynthesis protein E anchors TcpT to membrane1e-0860.8
NC_009457:351512:3883813883813894031023Vibrio cholerae O395 chromosome 2, complete sequencetoxin co-regulated pilus biosynthesis protein E1e-0860.8
NC_008786:4070753:4092581409258140938221242Verminephrobacter eiseniae EF01-2, complete genomehypothetical protein1e-0654.3