Pre_GI: BLASTP Hits

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Query: NC_004851:157675:165211 Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence

Start: 165211, End: 165432, Length: 222

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017319:155958:163873163873164094222Shigella flexneri 2002017 plasmid pSFxv_1, complete sequencehypothetical protein4e-36149
NC_009787:17344:177921779218013222Escherichia coli E24377A plasmid pETEC_35, complete sequencehypothetical protein6e-27119
NC_006856:95830:958309583096051222Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein6e-27119
NC_002128:35000:400474004740268222Escherichia coli O157:H7 str. Sakai plasmid pO157, completehypothetical protein1e-26117
NC_005815:61148:891768917689397222Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, completehypothetical protein4e-26116
NC_004838:51013:673256732567546222Yersinia pestis KIM plasmid pMT-1, complete sequencehypothetical protein4e-26116
NC_008118:56777:954679546795688222Yersinia pestis Nepal516 plasmid pMT, complete sequencehypothetical protein4e-26116
NC_010158:92819:109119109119109340222Yersinia pestis Angola plasmid pMT-pPCP, complete sequencehypothetical protein4e-26116
NC_009378:106193:131559131559131780222Yersinia pestis Pestoides F plasmid MT, complete sequencehypothetical protein4e-26116
NC_015063:1:164311643116652222Rahnella sp. Y9602 plasmid pRAHAQ02, complete sequencehypothetical protein1e-0961.6