Pre_GI: BLASTP Hits

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Query: NC_004741:3240909:3252828 Shigella flexneri 2a str. 2457T, complete genome

Start: 3252828, End: 3253204, Length: 377

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_000913:3256307:326823832682383268614377Escherichia coli K12, complete genomeRNase P RNA component precursor RnpB1e-49194
NC_011751:3710786:372515637251563725532377Escherichia coli UMN026 chromosome, complete genomeM11e-49194
CU928145:3608917:362518436251843625560377Escherichia coli 55989 chromosome, complete genomeM1 RNA1e-49194
NC_002695:3994970:400945140094514009827377Escherichia coli O157:H7 str. Sakai, complete genomeRnase P RNA1e-49194
NC_010473:3354052:336598333659833366359377Escherichia coli str. K-12 substr. DH10B, complete genomeRNase P RNA component precursor RnpB1e-49194
NC_011748:3608917:362518436251843625560377Escherichia coli 55989, complete genomeM1 RNA1e-49194
CP002516:613462:617777617777618153377Escherichia coli KO11, complete genomeRNA component of RNaseP1e-49194
NC_010658:3014371:301659030165903016890301Shigella boydii CDC 3083-94, complete genomeBacterial RNase P class A2e-44177
NC_010468:613812:620133620133620433301Escherichia coli ATCC 8739, complete genome2e-44177
NC_009800:3307123:331885233188523319152301Escherichia coli HS, complete genomeRNase P, class A2e-44177
NC_011750:3768692:378307637830763783376301Escherichia coli IAI39 chromosome, complete genomeRNaseP_bact_a2e-44177
CU928160:3344746:335647433564743356774301Escherichia coli IAI1 chromosome, complete genomeRNaseP_bact_a2e-44177