Pre_GI: BLASTP Hits

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Query: NC_004741:2593012:2600230 Shigella flexneri 2a str. 2457T, complete genome

Start: 2600230, End: 2601723, Length: 1494

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017387:247462:2902192902192917121494Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomeputative transposase01025
NC_017171:280762:2881962881962896891494Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomeputative transposase01025
NC_017162:270460:2788872788872803801494Acinetobacter baumannii 1656-2 chromosome, complete genomePutative transposase01025
NC_016445:89500:9552295522970151494Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetransposase InsA01025
NC_012668:3037345:3052570305257030540631494Vibrio cholerae MJ-1236 chromosome 1, complete sequenceIS phage Tn transposon-related protein01025
NC_011092:76993:7747177471789641494Salmonella enterica subsp. enterica serovar Schwarzengrund striscr2 transposase01025
NC_009651:19909:1990919909210961188Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5,putative transposase0810
NC_009651:19909:3212932129336701542Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5,hypothetical protein0663
NC_010410:3606826:3652779365277936543201542Acinetobacter baumannii AYE, complete genomeputative transposase0663
NC_009838:81913:1008861008861024151530Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequencetransposase1e-153543
NC_009140:121107:1303701303701318991530Salmonella enterica enterica sv Newport str. SL254, completetransposase InsE1e-153543
NC_016445:89500:9980699806100345540Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completehypothetical protein5e-76285
NC_010170:1551923:1562792156279215643391548Bordetella petrii, complete genomeputative transposase1e-57224
NC_008712:215499:2366702366702382171548Arthrobacter aurescens TC1 plasmid TC1, complete sequenceISPps1, transposase3e-57223
NC_003384:157158:1629211629211641251205Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid2e-50200
NC_011751:4992500:500637950063795006792414Escherichia coli UMN026 chromosome, complete genome2e-49197
NC_013365:92973:113049113049113450402Escherichia coli O111:H- str. 11128 plasmid pO111_1, completehypothetical protein4e-49196
NC_014315:2659479:267074326707432671168426Nitrosococcus watsoni C-113 chromosome, complete genomeIS phage Tn transposon-like protein4e-27123
NC_017030:3608000:362230636223063622725420Corallococcus coralloides DSM 2259 chromosome, complete genomehypothetical protein2e-24114
NC_014623:2962330:297415729741572974540384Stigmatella aurantiaca DW4/3-1 chromosome, complete genometransposase2e-1790.9
NC_010170:1551923:1570186157018615722372052Bordetella petrii, complete genometransposition-related fusion-protein3e-1790.1
NC_008712:215499:2288682288682307511884Arthrobacter aurescens TC1 plasmid TC1, complete sequence4e-1789.7
NC_015732:982774:1000886100088610021061221Spirochaeta caldaria DSM 7334 chromosome, complete genomehypothetical protein4e-1480.1
NC_014623:3029853:305309730530973053714618Stigmatella aurantiaca DW4/3-1 chromosome, complete genometransposase-like protein1e-1378.2
NC_019897:209523:2161202161202173671248Thermobacillus composti KWC4 chromosome, complete genometransposase1e-1171.6
NC_010424:214640:223810223810224022213Candidatus Desulforudis audaxviator MP104C, complete genome1e-0758.5