Pre_GI: BLASTP Hits

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Query: NC_004631:4494000:4498207 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 4498207, End: 4499001, Length: 795

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:4482437:448647544864754487269795Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Vi polysaccharide export inner-membrane protein vexB3e-141500
NC_003198:4513900:451462145146214515415795Salmonella enterica subsp. enterica serovar Typhi str. CT18,Vi polysaccharide export inner-membrane protein (ABC-2 type transporter)3e-141500
NC_012125:4559990:456402845640284564822795Salmonella enterica subsp. enterica serovar Paratyphi C strainVi polysaccharide export inner-membrane protein4e-141500
NC_014541:475350:496668496668497474807Ferrimonas balearica DSM 9799 chromosome, complete genomeABC-2 type transporter2e-1273.2
NC_013282:646569:651829651829652635807Cronobacter turicensis, complete genomePolysialic acid transport protein kpsM3e-1169.3
NC_009778:3287693:329944232994423300218777Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-1169.3
NC_020260:3277007:329053632905363291312777Cronobacter sakazakii Sp291, complete genomehypothetical protein4e-1168.6
NC_014618:4010689:402792940279294028705777Enterobacter cloacae SCF1 chromosome, complete genomeABC transporter5e-1168.6
NC_011901:1398376:140228414022841403063780Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeABC 2 transporter integral membrane protein2e-1066.6
NC_011745:3511600:352480235248023525638837Escherichia coli ED1a chromosome, complete genomePolysialic acid transport protein4e-1065.5
NC_011751:3530954:355054535505453551381837Escherichia coli UMN026 chromosome, complete genomepolysialic acid transport protein5e-1065.1
NC_008253:3161311:319554131955413196317777Escherichia coli 536, complete genomepolysialic acid transport protein KpsM6e-1064.7
NC_012967:3012317:302768530276853028461777Escherichia coli B str. REL606 chromosome, complete genomePolysialic acid transport protein kpsM9e-1064.3
NC_004431:3513147:352851635285163529292777Escherichia coli CFT073, complete genomeKpsM protein9e-1063.9
NC_017047:1434500:144774914477491448525777Rahnella aquatilis HX2 chromosome, complete genomeABC transporter3e-0962.4
NC_015061:1481500:149479714947971495573777Rahnella sp. Y9602 chromosome, complete genomeABC transporter3e-0962.4
NC_014618:586240:595117595117595893777Enterobacter cloacae SCF1 chromosome, complete genomeABC transporter5e-0961.6
NC_012586:922095:935872935872936648777Rhizobium sp. NGR234 plasmid pNGR234b, complete sequenceRkpT2, cell surface polysaccharide export ABC-2 transporter5e-0961.6
NC_007946:3289151:330440833044083305184777Escherichia coli UTI89, complete genomepolysialic acid transport protein KpsM9e-0960.8
NC_008563:3362058:337731533773153378091777Escherichia coli APEC O1, complete genomepolysialic acid transport protein KpsM9e-0960.8
NC_010498:3291344:330699033069903307766777Escherichia coli SMS-3-5, complete genomepolysialic acid capsule biosynthesis transport protein KpsM9e-0960.8
NC_011742:3277941:329210732921073292943837Escherichia coli S88 chromosome, complete genomePolysialic acid transport protein1e-0860.5
NC_011750:3584000:359843735984373599273837Escherichia coli IAI39 chromosome, complete genomepolysialic acid transport protein1e-0860.5
NC_015976:1064888:107214710721471072944798Sphingobium sp. SYK-6, complete genomeputative capsule polysaccharide export inner-membrane protein2e-0860.1
NC_015424:1689500:169825316982531699053801Aeromonas veronii B565 chromosome, complete genomecapsule transport protein KpsM4e-0858.9
NC_009430:16500:223392233923136798Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, completehypothetical protein8e-0857.8
NC_010505:1264758:126880912688091269603795Methylobacterium radiotolerans JCM 2831, complete genomeABC-2 type transporter1e-0757
NC_015593:2841856:286911828691182869924807Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeABC-2 type transporter2e-0756.6
NC_015696:758153:769775769775770632858Francisella sp. TX077308 chromosome, complete genomepolysialic acid transport protein KpsM3e-0755.8
NC_012586:922095:944307944307945077771Rhizobium sp. NGR234 plasmid pNGR234b, complete sequenceRkpT1, cell surface polysaccharide export ABC-2 transporter6e-0754.7
NC_008751:2988235:301210630121063012942837Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeABC-2 type transporter8e-0754.3
NC_018000:3009864:302861630286163029386771Sinorhizobium fredii USDA 257 chromosome, complete genomepolysialic acid transport protein KpsM8e-0754.3
NC_011989:1604939:161129116112911612052762Agrobacterium vitis S4 chromosome 1, complete sequencepolysialic acid transport protein2e-0652.8
NC_010725:2589014:259395025939502594744795Methylobacterium populi BJ001, complete genomeABC-2 type transporter2e-0652.8
NC_015596:1511961:151653315165331517303771Sinorhizobium meliloti AK83 chromosome 2, complete sequenceABC transporter4e-0652.4
NC_014532:1579419:158808015880801588892813Halomonas elongata DSM 2581, complete genomeABC-type transport system permease protein8e-0651.2
NC_010336:1248071:125897912589791259773795Francisella philomiragia subsp. philomiragia ATCC 25017, completepolysialic acid transport protein KpsM8e-0650.8
NC_015596:1511961:152481715248171525593777Sinorhizobium meliloti AK83 chromosome 2, complete sequenceABC transporter9e-0650.8