Pre_GI: BLASTP Hits

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Query: NC_004603:3080614:3097104 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 3097104, End: 3098708, Length: 1605

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:2548720:2557835255783525594421608Pseudomonas putida ND6 chromosome, complete genomehypothetical protein9e-26118
NC_020829:636773:6431226431226446361515Pseudomonas denitrificans ATCC 13867, complete genomeintegrase/recombinase4e-20100
NC_014366:478000:4853014853014868841584Gamma proteobacterium HdN1, complete genomePhage integrase, probable truncated5e-1892.8
NC_015458:2998000:3007611300761130091521542Pusillimonas sp. T7-7 chromosome, complete genomeintegrase family protein5e-1892.8
NC_010322:583842:5907045907045922691566Pseudomonas putida GB-1 chromosome, complete genomeintegrase family protein3e-1790.5
NC_010571:2943369:2951780295178029533271548Opitutus terrae PB90-1, complete genomeintegrase family protein2e-1687.8
NC_015726:406450:4153564153564168881533Cupriavidus necator N-1 chromosome 1, complete sequenceintegrase/recombinase5e-1582.8
NC_016816:1545354:1557401155740115589451545Pantoea ananatis LMG 5342, complete genomesite-specific recombinase, phage integrase family5e-1479.7
NC_009524:1369395:1379784137978413813851602Psychrobacter sp. PRwf-1 chromosome, complete genomephage integrase family protein6e-1479.3
NC_014311:3076519:3115549311554931171411593Ralstonia solanacearum PSI07 chromosome, complete genomephage integrase1e-1275.1
NC_005773:4899252:4902917490291749045151599Pseudomonas syringae pv. phaseolicola 1448A, complete genomesite-specific recombinase, phage integrase family3e-1273.9
NC_008740:2563278:2579698257969825812061509Marinobacter aquaeolei VT8, complete genomephage integrase family protein3e-1273.9
NC_014562:2563466:2593225259322525947601536Pantoea vagans C9-1 chromosome, complete genomehypothetical protein4e-1170.1
NC_013421:1819036:1850692185069218520021311Pectobacterium wasabiae WPP163, complete genomeintegrase family protein1e-1068.6
NC_012918:4648220:4648220464822046492331014Geobacter sp. M21 chromosome, complete genomeintegrase family protein3e-0963.9
NC_011283:4438500:4461238446123844625091272Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase7e-0962.8
NC_004547:1174650:1188401118840111898941494Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative integrase5e-0859.7
NC_003919:3396136:3408402340840234099821581Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein9e-0858.9
NC_008800:1090000:1100515110051511018731359Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative integrase/recombinase1e-0758.2
NC_011663:674069:6777386777386792911554Shewanella baltica OS223 chromosome, complete genomeintegrase family protein6e-0652.8
NC_009665:639914:6435776435776451301554Shewanella baltica OS185 chromosome, complete genomephage integrase family protein6e-0652.8
NC_011741:4570498:4582485458248545838491365Escherichia coli IAI1 chromosome, complete genomeputative integrase7e-0652.8
CU928160:4570498:4582485458248545838491365Escherichia coli IAI1 chromosome, complete genomePutative integrase7e-0652.8