Pre_GI: BLASTP Hits

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Query: NC_004603:1115134:1122580 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1122580, End: 1124403, Length: 1824

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016023:915178:9358929358929377001809Bacillus coagulans 36D1 chromosome, complete genometype III restriction protein res subunit7e-177620
NC_009656:3817261:3830088383008838321182031Pseudomonas aeruginosa PA7 chromosome, complete genomeputative helicase4e-75282
NC_021184:4312000:4318212431821243201101899Desulfotomaculum gibsoniae DSM 7213, complete genomeDNA/RNA helicase, superfamily II4e-56219
NC_013361:4959323:4963364496336449652231860Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein1e-55218
NC_014815:4491413:4506314450631445083922079Micromonospora sp. L5 chromosome, complete genometype iii restriction protein res subunit2e-25118
NC_013508:26348:3705037050402863237Edwardsiella tarda EIB202, complete genomeputative helicase1e-25118
NC_015379:6226661:6239740623974062427092970Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative type III restriction enzyme, res subunit3e-25117
NC_015953:1:1319131933852067Streptomyces sp. SirexAA-E chromosome, complete genometype III restriction protein res subunit4e-24113
NC_017187:1580988:1585986158598615892613276Arcobacter butzleri ED-1, complete genomehelicase1e-22108
NC_019902:831911:8364258364258382661842Thioalkalivibrio nitratireducens DSM 14787, complete genometype III restriction enzyme, res subunit - like protein5e-22106
NC_013037:6281164:6292775629277562957622988Dyadobacter fermentans DSM 18053, complete genometype III restriction protein res subunit8e-22105
NC_010801:421906:4341214341214370572937Burkholderia multivorans ATCC 17616 chromosome 3, complete2e-21104
NC_010087:460591:4878014878014907372937Burkholderia multivorans ATCC 17616 chromosome 3, completetype III restriction protein res subunit2e-21104
NC_017271:4852351:4860735486073548636742940Xanthomonas campestris pv. raphani 756C chromosome, completeputative helicase3e-21103
NC_011001:854713:8628558628558657912937Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative helicase9e-2099
NC_013729:3573000:3580410358041035836463237Kribbella flavida DSM 17836, complete genometype III restriction protein res subunit2e-1998.2
NC_020211:554736:5688225688225721033282Serratia marcescens WW4, complete genometype III restriction protein res subunit2e-1790.9
NC_008391:865340:8734768734768767573282Burkholderia cepacia AMMD chromosome 2, complete sequencetype III restriction enzyme, res subunit2e-1687.4
NC_016112:1330500:1332673133267313355762904Methylomicrobium alcaliphilum chromosome, complete genomeDNA/RNA helicase2e-1481.3
NC_015601:627217:6340726340726356611590Erysipelothrix rhusiopathiae str. Fujisawa, complete genomeDNA/RNA helicase7e-1376.3
NC_002737:533291:5375715375715391541584Streptococcus pyogenes M1 GAS, complete genomeputative DEAD box family helicase, phage associated9e-1375.9
NC_020272:162779:1687481687481718793132Bacillus amyloliquefaciens IT-45, complete genomeATP-dependent RNA helicase8e-1375.9
NC_012793:383612:4080904080904112513162Geobacillus sp. WCH70, complete genometype III restriction protein res subunit2e-1274.7
NC_009952:997950:1017620101762010204362817Dinoroseobacter shibae DFL 12, complete genometype III restriction protein res subunit3e-1273.9
NC_009675:4644173:4668098466809846721444047Anaeromyxobacter sp. Fw109-5 chromosome, complete genometype III restriction protein res subunit4e-1273.6
NC_014915:2092678:2137988213798821404352448Geobacillus sp. Y412MC52 chromosome, complete genometype III restriction protein res subunit5e-1273.6
NC_013411:2975364:2998057299805730005042448Geobacillus sp. Y412MC61, complete genometype III restriction protein res subunit5e-1273.6
NC_008541:1042322:1051193105119310543843192Arthrobacter sp. FB24 chromosome 1, complete sequencetype III restriction enzyme, res subunit6e-1273.2
NC_011886:1176238:1194985119498511981403156Arthrobacter chlorophenolicus A6, complete genometype III restriction protein res subunit1e-1172
NC_014206:1467000:1468175146817514706312457Geobacillus sp. C56-T3 chromosome, complete genometype III restriction protein res subunit1e-1172
NC_009617:3263413:3271545327154532740822538Clostridium beijerinckii NCIMB 8052 chromosome, complete genometype III restriction protein, res subunit1e-1172
NC_010334:2615260:2637326263732626403733048Shewanella halifaxensis HAW-EB4, complete genometype III restriction protein res subunit2e-1171.6
NC_019897:2908971:2928416292841629316283213Thermobacillus composti KWC4 chromosome, complete genomeDNA/RNA helicase4e-1170.5
NC_014376:1472304:1478955147895514805381584Clostridium saccharolyticum WM1 chromosome, complete genometype III restriction protein res subunit3e-1170.5
NC_015164:4053765:4053765405376540561372373Bacteroides salanitronis DSM 18170 chromosome, complete genometype III restriction protein res subunit5e-1169.7
NC_012108:4454705:4468235446823544714653231Desulfobacterium autotrophicum HRM2, complete genomeHsdR36e-1169.7
NC_002939:1480474:1484238148423814873633126Geobacter sulfurreducens PCA, complete genomehelicase, putative7e-1169.7
NC_015660:3328595:3328595332859533314592865Geobacillus thermoglucosidasius C56-YS93 chromosome, completetype III restriction protein res subunit7e-1169.3
NC_012918:928903:9740289740289771563129Geobacter sp. M21 chromosome, complete genometype III restriction protein res subunit1e-1068.9
NC_013967:1590500:1607341160734116087531413Haloferax volcanii DS2 chromosome, complete genomeDNA repair helicase Rad252e-1067.8
NC_010556:316996:3224273224273247512325Exiguobacterium sibiricum 255-15, complete genometype III restriction protein res subunit2e-1067.8
NC_013169:1759900:1766874176687417699693096Kytococcus sedentarius DSM 20547, complete genomeDNA/RNA helicase, superfamily II2e-1067.8
NC_009675:4644173:4644173464417346484294257Anaeromyxobacter sp. Fw109-5 chromosome, complete genometype III restriction protein res subunit2e-1067.8
NC_013173:953633:9902449902449933723129Desulfomicrobium baculatum DSM 4028, complete genometype III restriction protein res subunit3e-1067.4
NC_005139:2201820:2204823220482322076152793Vibrio vulnificus YJ016 chromosome I, complete sequenceDNA or RNA helicase4e-1067
NC_009614:3748950:3763744376374437660472304Bacteroides vulgatus ATCC 8482 chromosome, complete genomehelicase6e-1066.6
NC_009614:3081190:3096739309673930989942256Bacteroides vulgatus ATCC 8482 chromosome, complete genomehypothetical protein6e-1066.2
NC_021066:839734:8476818476818506953015Raoultella ornithinolytica B6, complete genometype III restriction protein res subunit1e-0965.9
NC_020126:2381380:2400806240080624024431638Myxococcus stipitatus DSM 14675, complete genomeDEAD/DEAH box helicase1e-0965.5
NC_014033:1152994:1166084116608411675021419Prevotella ruminicola 23 chromosome, complete genometype III restriction-modification system subunit Res1e-0965.5
NC_012984:520000:5221505221505234091260Lactobacillus plantarum JDM1, complete genomeHelicase-like protein:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like protein1e-0965.5
NC_012108:4454705:4456089445608944592113123Desulfobacterium autotrophicum HRM2, complete genomeRecQ11e-0965.1
NC_012914:336750:3498003498003529613162Paenibacillus sp. JDR-2, complete genometype III restriction protein res subunit1e-0965.1
NC_015953:2603526:2611843261184326149833141Streptomyces sp. SirexAA-E chromosome, complete genometype III restriction protein res subunit3e-0964.3
NC_015576:612164:6653886653886684893102Mycobacterium sp. JDM601 chromosome, complete genometype III restriction enzyme res subunit2e-0964.3
NC_021177:2766910:2773012277301227761493138Streptomyces fulvissimus DSM 40593, complete genomeATP-dependent helicase3e-0963.9
NC_007164:62816:6655466554691452592Corynebacterium jeikeium K411, complete genomeputative helicase6e-0963.2
NC_020388:578500:6144146144146158231410Natronomonas moolapensis 8.8.11 complete genomeDNA repair helicase Rad258e-0962.8
NC_011891:4450031:4468556446855644716573102Anaeromyxobacter dehalogenans 2CP-1, complete genometype III restriction protein res subunit1e-0862.4
NC_019902:3397170:3397170339717034012584089Thioalkalivibrio nitratireducens DSM 14787, complete genomeHelicase-related protein9e-0962.4
NC_008576:3331825:3353272335327233544681197Magnetococcus sp. MC-1, complete genometype III restriction enzyme, res subunit1e-0862
NC_007954:334795:3347953347953379503156Shewanella denitrificans OS217, complete genometype III restriction enzyme, res subunit2e-0861.6
NC_007426:1840670:1850832185083218522411410Natronomonas pharaonis DSM 2160, complete genomehelicase homolog2e-0861.2
NC_009614:4918877:4945504494550449478582355Bacteroides vulgatus ATCC 8482 chromosome, complete genomehelicase3e-0860.8
NC_016593:1466226:1485223148522314878352613Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetype III restriction enzyme, res subunit5e-0860.1
NC_008212:1386834:1404871140487114062801410Haloquadratum walsbyi DSM 16790, complete genomeDNA repair helicase RAD255e-0860.1
NC_017167:2298962:2362062236206223638821821Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1type III restriction protein res subunit6e-0859.7
NC_015167:3469968:3481685348168534839792295Cellulophaga lytica DSM 7489 chromosome, complete genomeType I site-specific deoxyribonuclease6e-0859.7
NC_017167:1648913:1791053179105317928701818Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1type III restriction protein res subunit6e-0859.7
NC_013889:1740858:1755993175599317584072415Thioalkalivibrio sp. K90mix chromosome, complete genomeType I site-specific deoxyribonuclease7e-0859.7
NC_015434:1173794:1180675118067511837493075Verrucosispora maris AB-18-032 chromosome, complete genometype iii restriction protein res subunit1e-0758.9
NC_014166:1424754:1433522143352214359302409Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeType I site-specific deoxyribonuclease2e-0757.8
NC_009715:1470419:1486775148677514890602286Campylobacter curvus 525.92 chromosome, complete genometype I restriction-modification system, R subunit2e-0757.8
NC_015474:983468:9900959900959914441350Pyrococcus sp. NA2 chromosome, complete genomehypothetical protein3e-0757.4
NC_006814:51500:5407154071569202850Lactobacillus acidophilus NCFM, complete genomeputative phage DEAD box family helicase4e-0757
NC_014034:1418681:1421843142184314242962454Rhodobacter capsulatus SB1003 chromosome, complete genometype I restriction-modification system RcaSBIIIP subunit R6e-0756.6
NC_013757:3897413:3904713390471339078203108Geodermatophilus obscurus DSM 43160, complete genometype III restriction protein res subunit8e-0755.8
NC_016610:2077603:2089350208935020920612712Tannerella forsythia ATCC 43037 chromosome, complete genomehelicase C-terminal domain-containing protein1e-0655.1
NC_010545:83353:9547095470983792910Corynebacterium urealyticum DSM 7109, complete genomeputative helicase2e-0654.7
NC_014762:890914:8957698957698981202352Sulfuricurvum kujiense DSM 16994 chromosome, complete genometype i site-specific deoxyribonuclease3e-0654.3
NC_015677:1282865:1288035128803512904852451Ramlibacter tataouinensis TTB310 chromosome, complete genometype I site-specific restriction-modification system, R subunit7e-0653.1
NC_011761:1357799:1366160136616013684422283Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completetype I restriction-modification system, R subunit6e-0653.1
NC_009429:401500:4239974239974264442448Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, completehypothetical protein5e-0653.1
NC_011206:200000:2112852112852135672283Acidithiobacillus ferrooxidans ATCC 53993, complete genometype III restriction protein res subunit5e-0653.1
NC_013205:1123280:1143953114395311457761824Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,type III restriction protein res subunit8e-0652.8
NC_008818:1244612:1285708128570812873301623Hyperthermus butylicus DSM 5456, complete genomeDNA or RNA helicases of superfamily II8e-0652.8
NC_011145:1732499:1743021174302117453512331Anaeromyxobacter sp. K, complete genometype III restriction protein res subunit9e-0652.4