Pre_GI: BLASTP Hits

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Query: NC_004578:6334735:6345505 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 6345505, End: 6346263, Length: 759

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010943:2091199:210784721078472108611765Stenotrophomonas maltophilia K279a, complete genomeputative transmembrane protein1e-72273
NC_016582:11380000:113931901139319011394092903Streptomyces bingchenggensis BCW-1 chromosome, complete genomeintegral membrane protein2e-67255
NC_020157:36234:416424164242385744Anabaena cylindrica PCC 7122 plasmid pANACY.02, complete sequenceprotein of unknown function DUF3476e-65247
NC_021172:169215:179408179408180229822Hyphomicrobium denitrificans 1NES1, complete genomehypothetical protein5e-57221
NC_015656:1830220:184657018465701847358789Frankia symbiont of Datisca glomerata chromosome, complete genomehypothetical protein3e-56218
NC_015376:662844:669576669576670352777Burkholderia gladioli BSR3 chromosome chromosome 2, completehypothetical protein3e-50198
NC_007973:3240866:325981332598133260571759Ralstonia metallidurans CH34 chromosome 1, complete sequenceprotein of unknown function DUF3475e-49194
NC_012969:2476318:249696624969662497724759Methylovorus glucosetrophus SIP3-4 chromosome, complete genomehypothetical protein7e-48190
NC_012857:41946:639896398964747759Ralstonia pickettii 12D chromosome 2, complete genomeprotein of unknown function DUF3473e-47188
NC_010678:900389:922432922432923190759Ralstonia pickettii 12J chromosome 2, complete sequenceprotein of unknown function DUF3473e-47188
NC_007794:262402:270703270703271512810Novosphingobium aromaticivorans DSM 12444, complete genomehypothetical protein3e-46185
NC_011000:2732330:276026527602652761023759Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein1e-43176
NC_013283:113660:126712672034768Cronobacter turicensis plasmid pCTU1, complete sequencehypothetical protein9e-43173
NC_010001:1806000:1813126181312618143131188Clostridium phytofermentans ISDg, complete genomeprotein of unknown function DUF3471e-41169
NC_007973:3240866:325854232585423259324783Ralstonia metallidurans CH34 chromosome 1, complete sequenceprotein of unknown function DUF3472e-40166
NC_011000:2732330:275898527589852759767783Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein2e-39162
NC_014618:57707:616236162362408786Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein1e-37156
NC_003888:7028165:703279870327987033637840Streptomyces coelicolor A3(2), complete genomeintegral membrane protein5e-37154
NC_012914:5194791:5200295520029552014971203Paenibacillus sp. JDR-2, complete genomeprotein of unknown function DUF3476e-37154
NC_016582:11380000:113921971139219711393024828Streptomyces bingchenggensis BCW-1 chromosome, complete genomeintegral membrane protein2e-36152
NC_008699:1673181:169972216997221700594873Nocardioides sp. JS614, complete genomeprotein of unknown function DUF3472e-34145
NC_008278:6885254:6912487691248769137821296Frankia alni ACN14a, complete genomePutative integral membrane protein (partial match)2e-32139
NC_012914:5194791:519947651994765200273798Paenibacillus sp. JDR-2, complete genomeprotein of unknown function DUF3479e-31134
NC_015850:1850741:185752818575281858319792Acidithiobacillus caldus SM-1 chromosome, complete genomehypothetical protein3e-29129
NC_011761:2067695:207698720769872077781795Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completehypothetical protein2e-27122
NC_015656:1830220:184099718409971841866870Frankia symbiont of Datisca glomerata chromosome, complete genomehypothetical protein7e-25114