Pre_GI: BLASTP Hits

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Query: NC_004578:6089958:6118825 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 6118825, End: 6118932, Length: 108

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:6089958:611972461197246120185462Pseudomonas syringae pv. tomato str. DC3000, complete genomeacetyltransferase, GNAT family1e-1375.5
NC_005773:176885:185495185495185968474Pseudomonas syringae pv. phaseolicola 1448A, complete genomeacetyltransferase, GNAT family3e-1270.5
NC_007005:5825925:584015958401595840632474Pseudomonas syringae pv. syringae B728a, complete genomeGCN5-related N-acetyltransferase2e-1167.8
NC_007492:3655545:366565836656583666140483Pseudomonas fluorescens PfO-1, complete genomeGCN5-related N-acetyltransferase3e-0960.5
NC_020209:2119845:213276821327682133250483Pseudomonas poae RE*1-1-14, complete genomeGNAT family acetyltransferase9e-0855.8