Pre_GI: BLASTP Hits

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Query: NC_004578:568236:569945 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 569945, End: 571171, Length: 1227

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015733:2963548:2977407297740729786001194Pseudomonas putida S16 chromosome, complete genomehypothetical protein8e-129460
NC_015711:2050360:2056597205659720577931197Myxococcus fulvus HW-1 chromosome, complete genomehypothetical protein1e-39164
NC_015850:761500:7644577644577657341278Acidithiobacillus caldus SM-1 chromosome, complete genomehypothetical protein4e-39162
NC_010725:3961981:3965622396562239669291308Methylobacterium populi BJ001, complete genomeHipA domain protein6e-38158
NC_008609:251608:2608462608462621381293Pelobacter propionicus DSM 2379, complete genomeHipA domain protein4e-23109
NC_010814:294394:2995142995143008061293Geobacter lovleyi SZ, complete genomeHipA domain protein2e-22107
NC_016589:2824164:2844132284413228454781347Burkholderia sp. YI23 chromosome 1, complete sequenceHipA domain-containing protein9e-22104
NC_013446:2961647:2990142299014229914011260Comamonas testosteroni CNB-2, complete genomehypothetical protein1e-21104
NC_002939:2617037:2631147263114726323101164Geobacter sulfurreducens PCA, complete genomehypothetical protein2e-21103
NC_019973:5716453:5749101574910157503481248Mesorhizobium australicum WSM2073, complete genomeHipA-like protein8e-21101
NC_015675:6342164:6374812637481263760591248Mesorhizobium opportunistum WSM2075 chromosome, complete genomeHipA domain-containing protein8e-21101
NC_014923:5787493:5820141582014158213881248Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeHipA domain protein8e-21101
NC_009943:1043210:1047736104773610489651230Candidatus Desulfococcus oleovorans Hxd3, complete genomeHipA domain protein6e-2098.6
NC_009615:2503465:2543269254326925445341266Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein3e-1996.7
NC_014151:3797861:3802126380212638034031278Cellulomonas flavigena DSM 20109 chromosome, complete genomeHipA domain protein5e-1995.9
NC_009665:2352528:2362631236263123638931263Shewanella baltica OS185 chromosome, complete genomeHipA domain-containing protein7e-1892
NC_014923:5765660:5767382576738257686681287Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeHipA domain protein1e-1791.3
NC_015675:6276357:6322053632205363233391287Mesorhizobium opportunistum WSM2075 chromosome, complete genomeHipA domain-containing protein1e-1791.3
NC_019973:5694620:5696342569634256976281287Mesorhizobium australicum WSM2073, complete genomecapsule biosynthesis enzymes related protein1e-1791.3
NC_016803:2431672:2455849245584924570991251Desulfovibrio desulfuricans ND132 chromosome, complete genomeHipA domain-containing protein7e-1788.6
NC_002928:507749:5543395543395555291191Bordetella parapertussis 12822, complete genomehypothetical protein1e-1687.8
NC_017223:51180:5924959249604751227Bordetella pertussis CS chromosome, complete genomehypothetical protein2e-1687.4
NC_002929:52500:5924959249604751227Bordetella pertussis Tohama I, complete genomehypothetical protein2e-1687.4
NC_002927:506183:5545445545445558391296Bordetella bronchiseptica RB50, complete genomehypothetical protein7e-1685.5
NC_010803:242705:2633172633172645641248Chlorobium limicola DSM 245, complete genomeHipA domain protein1e-1584.7
NC_015497:4683741:4702719470271947039571239Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeHipA domain protein1e-1378.2
NC_012108:4971086:4998654499865449999521299Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein4e-1272.8
NC_012483:1841000:1842843184284318440811239Acidobacterium capsulatum ATCC 51196, complete genomeHipA family protein2e-1170.5
NC_016816:3974895:3998338399833839995881251Pantoea ananatis LMG 5342, complete genomeHipA domain-containing protein3e-1170.1
NC_016609:7608723:7622598762259876238781281Niastella koreensis GR20-10 chromosome, complete genomeHipA domain-containing protein3e-1170.1
NC_004547:138500:1458011458011470511251Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein4e-1169.7
NC_015160:2145915:2148043214804321495331491Odoribacter splanchnicus DSM 20712 chromosome, complete genomeHipA domain-containing protein3e-1169.7
NC_014973:4174668:4196676419667641979261251Geobacter sp. M18 chromosome, complete genomeHipA domain-containing protein1e-1068.2
NC_015160:2239933:2244469224446922459621494Odoribacter splanchnicus DSM 20712 chromosome, complete genomeHipA domain-containing protein2e-1067.4
NC_009663:1656804:1663154166315416643711218Sulfurovum sp. NBC37-1, complete genomehypothetical protein7e-0962
NC_012778:748143:7637147637147650211308Eubacterium eligens ATCC 27750, complete genomehypothetical protein9e-0962
NC_011060:244949:2596282596282608721245Pelodictyon phaeoclathratiforme BU-1, complete genomeHipA domain protein9e-0961.6
NC_015761:4355335:435570943557094356320612Salmonella bongori NCTC 12419, complete genomehypothetical protein7e-0755.5
NC_011060:244949:256608256608257066459Pelodictyon phaeoclathratiforme BU-1, complete genomeHipA domain protein9e-0755.1
NC_010815:40357:4620246202474461245Geobacter lovleyi SZ plasmid pGLOV01, complete sequenceHipA domain protein3e-0653.5