Pre_GI: BLASTP Hits

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Query: NC_004578:5336773:5396264 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5396264, End: 5396704, Length: 441

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020829:4429435:445048844504884450811324Pseudomonas denitrificans ATCC 13867, complete genometranscriptional regulator5e-0960.1
NC_005773:3220500:324109332410933241329237Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscriptional regulator, PbsX family1e-0755.1
NC_017986:2548720:256271225627122563032321Pseudomonas putida ND6 chromosome, complete genomehelix-turn-helix domain-containing protein5e-0753.1
NC_017986:5797044:581446358144635814777315Pseudomonas putida ND6 chromosome, complete genomePbsX family transcriptional regulator7e-0752.8
NC_010322:583842:594787594787595062276Pseudomonas putida GB-1 chromosome, complete genomehelix-turn-helix domain-containing protein7e-0752.8
NC_014540:2828299:284515128451512845447297Burkholderia sp. CCGE1003 chromosome 2, complete sequencehelix-turn-helix domain-containing protein1e-0652
NC_004578:3193490:320831232083123208635324Pseudomonas syringae pv. tomato str. DC3000, complete genomeDNA-binding protein2e-0651.6
NC_020209:4312892:433540243354024335872471Pseudomonas poae RE*1-1-14, complete genomeCro/CI family transcriptional regulator2e-0651.2
NC_010501:2609567:262073326207332621008276Pseudomonas putida W619, complete genomehelix-turn-helix domain protein4e-0650.1