Pre_GI: BLASTP Hits

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Query: NC_004578:3921199:3921199 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3921199, End: 3922875, Length: 1677

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012846:2299282:2306449230644923080711623Bartonella grahamii as4aup, complete genomemulticomponent K+:H+ antiporter subunit D3e-85316
NC_008783:29972:3915939159407811623Bartonella bacilliformis KC583, complete genomepH adaptation potassium efflux system protein PhaD3e-85316
NC_005956:1888500:1895772189577218973941623Bartonella henselae str. Houston-1, complete genomeNADH dehydrogenase subunit N3e-82306
NC_005955:1540838:1548009154800915496311623Bartonella quintana str. Toulouse, complete genomeNADH dehydrogenase subunit N1e-81304
NC_010725:5491491:5516850551685055184541605Methylobacterium populi BJ001, complete genomeNADH/Ubiquinone/plastoquinone (complex I)1e-67258
NC_008260:2992813:3000146300014630016271482Alcanivorax borkumensis SK2, complete genomemultisubunit Na+/H+ antiporter, MnhD subunit3e-57223
NC_016041:2420098:2429267242926724307931527Glaciecola nitratireducens FR1064 chromosome, complete genomeNADH dehydrogenase subunit N2e-55217
NC_019940:1963000:1980035198003519815611527Thioflavicoccus mobilis 8321 chromosome, complete genomeformate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit5e-55216
NC_016603:3475843:3486055348605534878661812Acinetobacter calcoaceticus PHEA-2 chromosome, complete genomeputative monovalent cation/H+ antiporter subunit D1e-54214
NC_015276:565701:5733675733675748901524Marinomonas mediterranea MMB-1 chromosome, complete genomeNADH dehydrogenase (quinone)3e-54213
NC_016614:1178000:1204758120475812062541497Vibrio sp. EJY3 chromosome 2, complete sequenceNa(+) H(+) antiporter subunit D4e-36153
NC_015914:3317029:3338463333846333399711509Cyclobacterium marinum DSM 745 chromosome, complete genomeNADH/Ubiquinone/plastoquinone (complex I)7e-34145
NC_011059:65414:9604396043975601518Prosthecochloris aestuarii DSM 271, complete genomeNADH dehydrogenase (quinone)4e-33143
NC_002971:1523065:1530721153072115322201500Coxiella burnetii RSA 493, complete genomemonovalent cation/proton antiporter subunit, putative1e-28128
NC_014655:3345204:3355181335518133566801500Leadbetterella byssophila DSM 17132 chromosome, complete genomemultisubunit sodium/proton antiporter, mrpd subunit2e-28127
NC_018645:247917:2583202583202598161497Desulfobacula toluolica Tol2, complete genomeNa(+)/H(+) antiporter subunit D1e-27124
NC_006322:3198829:3201984320198432034711488Bacillus licheniformis ATCC 14580, complete genomeMrpD3e-26120
NC_014225:1403007:1414704141470414161821479Waddlia chondrophila WSU 86-1044 chromosome, complete genomemultiple resistance and pH homeostasis system, subunit D4e-25116
NC_013595:7302888:7321116732111673227051590Streptosporangium roseum DSM 43021, complete genomeNa(+)/H(+) antiporter subunit D2e-24114
NC_019903:134169:1441601441601456591500Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit2e-24114
NC_016642:2573481:2584536258453625861221587Pseudovibrio sp. FO-BEG1 chromosome, complete genomemonovalent cation/H+ antiporter subunit D1e-22108
NC_003888:7706226:7723478772347877252171740Streptomyces coelicolor A3(2), complete genomeoxidoreductase8e-1995.9
NC_019977:1621939:1645041164504116465791539Methanomethylovorans hollandica DSM 15978, complete genomeformate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit2e-1894.4
NC_013169:513327:5133275133275148921566Kytococcus sedentarius DSM 20547, complete genomeformate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit2e-1790.9
NC_017317:246155:2638142638142653521539Corynebacterium ulcerans 809 chromosome, complete genomeNa(+)/H(+) antiporter subunit D1e-1585.5
NC_015683:241377:2658472658472673851539Corynebacterium ulcerans BR-AD22 chromosome, complete genomeNa(+)/H(+) antiporter subunit D1e-1585.1
NC_013166:784339:7918027918027932801479Kangiella koreensis DSM 16069, complete genomeNADH dehydrogenase (quinone)2e-1480.9
NC_005363:2172444:2178526217852621799861461Bdellovibrio bacteriovorus HD100, complete genomeNADH dehydrogenase3e-1480.5
NC_009831:4447919:4466881446688144683591479Shewanella sediminis HAW-EB3, complete genomeNADH dehydrogenase (quinone)3e-1480.5
NC_018524:2423016:2446930244693024484531524Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeNADH-Ubiquinone/plastoquinone (complex I), various chains family protein1e-1378.6
NC_012026:21385:2138521385228991515Anaplasma marginale str. Florida, complete genomeNADH dehydrogenase I chain N (nuoN)6e-1376.3
NC_018697:825058:8327328327328342221491Cycloclasticus sp. P1 chromosome, complete genomeNADH dehydrogenase2e-1067.8
NC_008345:2717945:2726963272696327282761314Shewanella frigidimarina NCIMB 400, complete genomeNADH dehydrogenase (quinone)2e-1067.8
NC_014315:1249071:1256414125641412578861473Nitrosococcus watsoni C-113 chromosome, complete genomeNADH/ubiquinone/plastoquinone complex I6e-1066.2
NC_012982:1282856:1291397129139712929261530Hirschia baltica ATCC 49814, complete genomeNADH/Ubiquinone/plastoquinone (complex I)1e-0965.5
NC_014010:484000:4916184916184931171500Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeNADH dehydrogenase (quinone)3e-0860.8
NC_000868:643548:6636566636566651371482Pyrococcus abyssi GE5, complete genomeNADH dehydrogenase subunit N3e-0757
NC_010718:517473:5307635307635322621500Natranaerobius thermophilus JW/NM-WN-LF, complete genomeproton-translocating NADH-quinone oxidoreductase, chain M8e-0755.8
NC_012704:2347969:2351544235154423532591716Corynebacterium kroppenstedtii DSM 44385, complete genomeNa(+)/H(+) antiporter formate hydrogenlyase subunit4e-0653.5