Pre_GI: BLASTP Hits

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Query: NC_004578:3817330:3833793 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3833793, End: 3836543, Length: 2751

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004129:2234851:2234851223485122374182568Pseudomonas fluorescens Pf-5, complete genometail tape meausure protein0806
NC_016830:4999946:5018559501855950211382580Pseudomonas fluorescens F113 chromosome, complete genomePhage tail tape measure protein0734
NC_015733:1976752:1976752197675219802403489Pseudomonas putida S16 chromosome, complete genomeputative pyocin R2_PP, tail length determination protein0692
NC_017986:4124335:4124335412433541277243390Pseudomonas putida ND6 chromosome, complete genomeputative pyocin R2 PP, tail length determination protein0691
NC_012724:3070386:3086933308693330891072175Burkholderia glumae BGR1 chromosome 1, complete genomePyocin R2_PP, tail length determination protein, putative1e-141504
NC_008390:2018201:2038128203812820405722445Burkholderia cepacia AMMD chromosome 1, complete sequencepyocin R2_PP, tail length determination protein, putative2e-138493
NC_015381:3457784:3475494347549434774461953Burkholderia gladioli BSR3 chromosome 1, complete sequencePyocin R2_PP, tail length determination protein1e-137491
NC_017033:1089579:1090522109052210928402319Frateuria aurantia DSM 6220 chromosome, complete genomePhage-related minor tail protein8e-127455
NC_014307:1765230:1774499177449917770032505Ralstonia solanacearum CFBP2957 chromosome, complete genomephage tail tape measure protein1e-31139
NC_005085:1564087:1571130157113015738562727Chromobacterium violaceum ATCC 12472, complete genomeprobable bacteriophage protein3e-29130
NC_011002:564654:5820795820795846192541Burkholderia cenocepacia J2315 chromosome 3, complete sequenceputative phage tail protein5e-29130
NC_011750:2009889:2027129202712920300802952Escherichia coli IAI39 chromosome, complete genomeputative phage minor tail protein4e-1894
NC_002927:3827211:3842005384200538442092205Bordetella bronchiseptica RB50, complete genomehypothetical protein2e-1792
NC_006576:856014:8742818742818771332853Synechococcus elongatus PCC 6301, complete genomeputative bacteriophage protein8e-1583.2
NC_007604:743738:7437387437387465902853Synechococcus elongatus PCC 7942, complete genomePhage tail tape measure protein TP901, core region2e-1482
NC_015381:2109500:211234121123412112628288Burkholderia gladioli BSR3 chromosome 1, complete sequencePyocin R2_PP, tail length determination protein2e-1481.6
NC_012721:2694829:2715780271578027181702391Burkholderia glumae BGR1 chromosome 2, complete genomePhage tail tape measure protein, TP901 family protein1e-0655.8