Pre_GI: BLASTP Hits

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Query: NC_004578:3193490:3215716 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3215716, End: 3218316, Length: 2601

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008463:2467219:2485638248563824881362499Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein0821
NC_009439:3770282:3777612377761237800982487Pseudomonas mendocina ymp, complete genomehypothetical protein0800
NC_009656:4527457:4566763456676345696272865Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein0774
NC_010002:5691968:5703969570396957063652397Delftia acidovorans SPH-1, complete genomehypothetical protein1e-157557
NC_007952:3196085:3222380322238032248182439Burkholderia xenovorans LB400 chromosome 2, complete sequencehypothetical protein8e-149528
NC_014910:1200605:1213322121332212152201899Alicycliphilus denitrificans BC chromosome, complete genome5e-140499
NC_012918:1444333:1452863145286314553252463Geobacter sp. M21 chromosome, complete genomehypothetical protein1e-131471
NC_016010:1822212:1846235184623518475571323Xanthomonas axonopodis pv. citrumelo F1 chromosome, completehypothetical protein3e-93343
NC_007493:1929000:1936160193616019386972538Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceplasma membrane H+-transporting two-sector ATPase, C subunit1e-89331
NC_019673:6259229:6259229625922962614902262Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein1e-88328
NC_016612:28451:4413244132464412310Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein2e-78294
NC_008435:2658986:2686492268649226888912400Rhodopseudomonas palustris BisA53, complete genomehypothetical protein2e-77291
NC_014217:2020737:2033955203395520371133159Starkeya novella DSM 506 chromosome, complete genomePeptidoglycan-binding domain 1 protein4e-76286
NC_015580:1584078:1593435159343515959542520Novosphingobium sp. PP1Y, complete genomeplasma membrane H+-transporting two-sector ATPase, C subunit6e-76286
NC_017047:2042346:2054994205499420573002307Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein6e-75282
NC_006370:1810842:1826082182608218283912310Photobacterium profundum SS9 chromosome 1, complete sequencehypothetical protein4e-72273
NC_014500:3175283:3191323319132331927381416Dickeya dadantii 3937 chromosome, complete genomehypothetical protein1e-53211
NC_007333:39579:7545175451795214071Thermobifida fusca YX, complete genomehypothetical protein6e-23110
NC_017075:1869326:1871590187159018735331944Rubrivivax gelatinosus IL144, complete genomehypothetical protein4e-1687.4