Pre_GI: BLASTP Hits

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Query: NC_004578:3193490:3208312 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3208312, End: 3208635, Length: 324

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:2548720:256271225627122563032321Pseudomonas putida ND6 chromosome, complete genomehelix-turn-helix domain-containing protein4e-1373.6
NC_020829:4429435:445048844504884450811324Pseudomonas denitrificans ATCC 13867, complete genometranscriptional regulator1e-1065.1
NC_005773:3220500:324109332410933241329237Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscriptional regulator, PbsX family6e-1062.8
NC_010322:583842:594787594787595062276Pseudomonas putida GB-1 chromosome, complete genomehelix-turn-helix domain-containing protein9e-1062.4
NC_008752:725189:744058744058744351294Acidovorax avenae subsp. citrulli AAC00-1, complete genometranscriptional regulator, XRE family3e-0857.4
NC_015381:2859000:289856828985682898861294Burkholderia gladioli BSR3 chromosome 1, complete sequenceXRE family transcriptional regulator3e-0857.4
NC_010170:4800000:481912848191284819427300Bordetella petrii, complete genomepredicted transcriptional regulator3e-0857
NC_020829:2152000:215225621522562152549294Pseudomonas denitrificans ATCC 13867, complete genomehelix-turn-helix domain-containing protein4e-0856.6
NC_010501:2609567:262073326207332621008276Pseudomonas putida W619, complete genomehelix-turn-helix domain protein6e-0856.2
NC_011992:1318691:134321513432151343505291Acidovorax ebreus TPSY, complete genomehelix-turn-helix domain protein1e-0755.1
NC_008577:1455000:147510214751021475392291Shewanella sp. ANA-3 chromosome 1, complete sequencetranscriptional regulator, XRE family1e-0755.1
NC_012791:2386000:239246023924602392813354Variovorax paradoxus S110 chromosome 1, complete genomehypothetical protein2e-0754.7
NC_009656:3869281:387000838700083870244237Pseudomonas aeruginosa PA7 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0754.7
NC_017986:5797044:581446358144635814777315Pseudomonas putida ND6 chromosome, complete genomePbsX family transcriptional regulator3e-0753.9
NC_003295:2787371:281222328122232812513291Ralstonia solanacearum GMI1000, complete genomePUTATIVE TRANSCRIPTION REGULATOR PROTEIN3e-0753.5
NC_012560:3667177:367114836711483671384237Azotobacter vinelandii DJ, complete genomeTranscriptional regulator Cro/CI-like protein4e-0753.5
NC_021150:3667176:367114736711473671383237Azotobacter vinelandii CA6, complete genomeTranscriptional regulator Cro/CI-like protein4e-0753.5
NC_004578:5336773:539626453962645396704441Pseudomonas syringae pv. tomato str. DC3000, complete genomeDNA-binding protein1e-0651.6