Pre_GI: BLASTP Hits

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Query: NC_004578:2671508:2673558 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2673558, End: 2674532, Length: 975

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009439:4734237:474938547493854750377993Pseudomonas mendocina ymp, complete genomealiphatic sulfonate ABC transporter periplasmic ligand-binding protein7e-115413
NC_010512:734834:750846750846751817972Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein3e-63242
NC_008392:542000:543030543030544001972Burkholderia cepacia AMMD chromosome 3, complete sequencealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein5e-63241
NC_016023:1839503:183950318395031840489987Bacillus coagulans 36D1 chromosome, complete genomealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein7e-63241
NC_008544:348500:364819364819365790972Burkholderia cenocepacia HI2424 chromosome 3, complete sequencealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein1e-62240
NC_008062:370902:386999386999387970972Burkholderia cenocepacia AU 1054 chromosome 3, complete sequenceABC transporter, substrate-binding protein, aliphatic sulphonates1e-62239
NC_007509:1383013:487648765847972Burkholderia sp. 383 chromosome 3, complete sequenceABC transporter, substrate-binding protein, aliphatic sulphonates5e-62238
NC_007509:3668:487648765847972Burkholderia sp. 383 chromosome 3, complete sequenceABC transporter, substrate-binding protein, aliphatic sulphonates5e-62238
NC_016830:6499234:650119765011976502162966Pseudomonas fluorescens F113 chromosome, complete genomeSsuA protein3e-61235
NC_009439:4734237:473761347376134738593981Pseudomonas mendocina ymp, complete genomealiphatic sulfonate ABC transporter periplasmic ligand-binding protein2e-59229
NC_009659:1129066:114738211473821148344963Janthinobacterium sp. Marseille chromosome, complete genomesulfonate ABC transporter periplasmic sulfonate-binding protein SsuA3e-52205
NC_016816:1970189:197217019721701973117948Pantoea ananatis LMG 5342, complete genomealiphatic sulfonate ABC transporter substrate-binding protein4e-47188
NC_021066:2197490:219653121965312197493963Raoultella ornithinolytica B6, complete genomealiphatic sulfonate ABC transporter substrate-binding protein4e-46185
NC_014121:2745097:274413827441382745100963Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completealkanesulfonate transporter substrate-binding subunit9e-44177
NC_016816:1970189:1970189197018919720751887Pantoea ananatis LMG 5342, complete genomeFis family sigma-54 specific transcriptional regulator3e-41169
NC_013510:517878:534199534199535191993Thermomonospora curvata DSM 43183, complete genomealiphatic sulfonates family ABC transporter, periplasmic ligand-binding protein3e-37155
NC_010725:5217260:523224952322495233190942Methylobacterium populi BJ001, complete genomealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein4e-26119
NC_010581:561579:581203581203582177975Beijerinckia indica subsp. indica ATCC 9039, complete genomealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein2e-24113
NC_013406:1217385:126499712649971265896900Paenibacillus sp. Y412MC10 chromosome, complete genomealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein5e-22105
NC_021182:4186515:4198028419802841990291002Clostridium pasteurianum BC1, complete genomeABC transporter, substrate-binding protein, aliphatic sulfonates family3e-21102
NC_016604:2944555:294455529445552945532978Mycobacterium rhodesiae NBB3 chromosome, complete genomeABC transporter, substrate-binding protein, aliphatic sulfonates family3e-2099.4
NC_009485:3461051:346335634633563464297942Bradyrhizobium sp. BTAi1 chromosome, complete genomealkanesulfonate ABC transporter substrate binding protein1e-1997.4
NC_009439:4734237:474664147466414747633993Pseudomonas mendocina ymp, complete genomealiphatic sulfonate ABC transporter periplasmic ligand-binding protein4e-1995.9
NC_010505:1205747:120989612098961210894999Methylobacterium radiotolerans JCM 2831, complete genomealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein5e-1995.1
NC_013406:1217385:126284012628401263826987Paenibacillus sp. Y412MC10 chromosome, complete genomealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein4e-1892.4
NC_020064:3998715:403051240305124031486975Serratia marcescens FGI94, complete genomeABC transporter, substrate-binding protein, aliphatic sulfonates family3e-1789.4
NC_012791:4079062:410154141015414102530990Variovorax paradoxus S110 chromosome 1, complete genomeextracellular solute-binding protein family 33e-1789.4
NC_010581:561579:5789225789225799471026Beijerinckia indica subsp. indica ATCC 9039, complete genomeABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family, putative5e-1789
NC_007952:444616:4446164446164456201005Burkholderia xenovorans LB400 chromosome 2, complete sequenceABC sulfonate transporter, periplasmic ligand binding protein1e-1687.4
NC_007509:644000:648999648999649997999Burkholderia sp. 383 chromosome 3, complete sequenceABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein2e-1686.7
NC_020064:3998715:402387240238724024816945Serratia marcescens FGI94, complete genomeABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component5e-1685.5
NC_008060:1346581:136220513622051363194990Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein1e-1584.3
NC_008544:818730:820796820796821785990Burkholderia cenocepacia HI2424 chromosome 3, complete sequenceABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein1e-1584.3
NC_019673:9084045:9099799909979991008601062Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-1583.2
NC_012791:4079062:409435240943524095317966Variovorax paradoxus S110 chromosome 1, complete genomealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein2e-1583.2
NC_015565:1163148:1169787116978711707941008Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein3e-1169.3
NC_020291:1535402:1552909155290915539551047Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomenitrate/sulfonate/bicarbonate ABC transport system substrate binding protein SsuA8e-1064.7
NC_007907:2830574:2837069283706928380701002Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-0963.9
NC_020291:4246500:4268423426842342694631041Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometaurine-binding periplasmic protein TauA2e-0963.2
NC_010510:409469:4233354233354248071473Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeABC transporter substrate-binding protein3e-0756.2
NC_007644:469181:4691814691814702241044Moorella thermoacetica ATCC 39073, complete genomeABC transporter, substrate-binding protein, aliphatic sulphonates4e-0755.8
NC_008596:1302000:1302007130200713034641458Mycobacterium smegmatis str. MC2 155, complete genomeABC transporter substrate-binding protein9e-0754.7
NC_015856:3170771:3170771317077131721831413Collimonas fungivorans Ter331 chromosome, complete genomenitrate ABC transporter periplasmic nitrate-binding protein2e-0653.1
NC_015172:951550:9572569572569583621107Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomealiphatic sulfonates family ABC transporter, periplasmic ligand-binding protein6e-0652