Pre_GI: BLASTP Hits

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Query: NC_004578:2185907:2185907 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2185907, End: 2186515, Length: 609

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005773:3851433:386749938674993868107609Pseudomonas syringae pv. phaseolicola 1448A, complete genomecytochrome c oxidase, cbb3-type, subunit II1e-113408
NC_007005:4062311:407938740793874079995609Pseudomonas syringae pv. syringae B728a, complete genomeCytochrome C oxidase, mono-heme subunit/FixO2e-106384
NC_007492:2035761:203883820388382039446609Pseudomonas fluorescens PfO-1, complete genomeCytochrome C oxidase, mono-heme subunit/FixO1e-91335
NC_012560:1965251:198681519868151987423609Azotobacter vinelandii DJ, complete genomecytochrome c oxidase, cbb3-type, subunit II5e-91333
NC_021150:1965264:198682819868281987436609Azotobacter vinelandii CA6, complete genomecytochrome c oxidase, cbb3-type, subunit II5e-91333
NC_016745:2229271:223341822334182234026609Oceanimonas sp. GK1 chromosome, complete genomecbb3-type cytochrome c oxidase subunit II4e-81300
NC_009092:2282437:229920022992002299805606Shewanella loihica PV-4, complete genomecytochrome c oxidase, cbb3-type, subunit II3e-80297
NC_014541:2122788:213714321371432137754612Ferrimonas balearica DSM 9799 chromosome, complete genomecytochrome c oxidase, cbb3-type, subunit II7e-76283
NC_009052:2512373:254857625485762549202627Shewanella baltica OS155, complete genomecytochrome c oxidase, cbb3-type, subunit II6e-73273
NC_015422:1163752:117188711718871172519633Alicycliphilus denitrificans K601 chromosome, complete genomecytochrome c oxidase, cbb3-type subunit II1e-70265
NC_014910:3458475:347183434718343472466633Alicycliphilus denitrificans BC chromosome, complete genomecytochrome c oxidase, cbb3-type, subunit ii1e-70265
NC_008782:1136732:114135311413531141985633Acidovorax sp. JS42, complete genomecytochrome c oxidase, cbb3-type, subunit II2e-70265
NC_011992:1038985:104360910436091044241633Acidovorax ebreus TPSY, complete genomecytochrome c oxidase, cbb3-type, subunit II2e-70265
NC_009379:435404:447437447437448087651Polynucleobacter sp. QLW-P1DMWA-1, complete genomecytochrome c oxidase, cbb3-type, subunit II3e-69261
NC_007298:778723:785031785031785666636Dechloromonas aromatica RCB, complete genomeCytochrome C oxidase, mono-heme subunit/FixO8e-66249
NC_008702:1432952:146203614620361462671636Azoarcus sp. BH72, complete genomeprobable cytochrome c oxidase, cbb3-type,subunit II9e-62236
NC_009465:29735:412314123141962732Candidatus Vesicomyosocius okutanii HA, complete genomecbb3-type cytochrome c oxidase subunit II3e-56218
NC_012848:320883:341894341894342628735Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501,cytochrome c oxidase, cbb3-type, subunit II2e-56218
NC_013422:2004478:201479020147902015521732Halothiobacillus neapolitanus c2, complete genomecytochrome c oxidase, cbb3-type, subunit II3e-51201
NC_014934:2223822:2223822222382222260202199Cellulophaga algicola DSM 14237 chromosome, complete genomecytochrome c oxidase, cbb3-type, subunit i2e-46185
NC_010118:133256:1469581469581491682211Candidatus Sulcia muelleri GWSS, complete genomebifunctional cytochrome c oxidase subunits ccoN/O3e-46184
NC_011146:1429836:143171814317181432578861Geobacter bemidjiensis Bem, complete genomecytochrome c oxidase, cbb3-type, subunit II2e-44178
NC_020126:7896447:7918373791837379207332361Myxococcus stipitatus DSM 14675, complete genomebifunctional cbb3-type cytochrome c oxidase subunit I/II2e-44178
NC_008095:6877388:6889429688942968918102382Myxococcus xanthus DK 1622, complete genomecytochrome c oxidase, cbb3-type, subunit I/II1e-41169
NC_009714:1329573:133220013322001332868669Campylobacter hominis ATCC BAA-381, complete genomecbb3-type cytochrome c oxidase subunit II5e-40163
NC_014166:3072703:308225730822573082940684Arcobacter nitrofigilis DSM 7299 chromosome, complete genomecbb3-type cytochrome c oxidase subunit II1e-36152
NC_012856:2266187:226783622678362268459624Ralstonia pickettii 12D chromosome 1, complete genomecytochrome C oxidase mono-heme subunit/FixO7e-23107
NC_006513:1695487:171785717178571718462606Azoarcus sp. EbN1, complete genomecytochrome oxidase, cytochrome c subunit3e-21101
NC_020541:1827689:184740418474041848036633Rhodanobacter sp. 2APBS1, complete genomeCbb3-type cytochrome oxidase, cytochrome c subunit7e-2097.1
NC_012660:2045398:2065341206534120666301290Pseudomonas fluorescens SBW25 chromosome, complete genomeputative cytochrome C oxidase (monoheme and diheme subunits)7e-1993.6
NC_015458:1938860:193886019388601939501642Pusillimonas sp. T7-7 chromosome, complete genomecytochrome C oxidase, mono-heme subunit/FixO3e-1891.7
NC_012483:996555:1034387103438710363121926Acidobacterium capsulatum ATCC 51196, complete genomecytochrome C family protein1e-1686.3
NC_012440:373863:375269375269376000732Persephonella marina EX-H1, complete genomecytochrome c oxidase, Cbb3-type, subunit II8e-1683.6