Pre_GI: BLASTP Hits

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Query: NC_004578:20738:62078 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 62078, End: 64063, Length: 1986

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010554:2646806:2663903266390326658671965Proteus mirabilis HI4320, complete genomeplasmid-related protein7e-119428
NC_009429:401500:4096894096894116621974Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, completeATP-dependent exoDNAse beta subunit8e-117421
NC_015563:4629436:4643129464312946450631935Delftia sp. Cs1-4 chromosome, complete genomeSMC domain-containing protein6e-114412
NC_007912:231817:2523342523342543342001Saccharophagus degradans 2-40, complete genomeATPase8e-100365
NC_008757:151862:1683401683401702771938Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completetranscriptional regulator, Fis family6e-99362
NC_014376:3732547:3759236375923637612992064Clostridium saccharolyticum WM1 chromosome, complete genomehypothetical protein2e-98360
NC_018665:2163713:2175404217540421774522049Exiguobacterium antarcticum B7 chromosome, complete genomeHypothetical protein1e-98360
NC_013166:32474:6755567555695401986Kangiella koreensis DSM 16069, complete genomehypothetical protein4e-97356
NC_012880:3421500:3442349344234934443281980Dickeya dadantii Ech703, complete genomeputative exonuclease2e-95350
NC_009442:908507:9085079085079105942088Streptococcus suis 05ZYH33 chromosome, complete genomehypothetical protein4e-95349
NC_017506:1222000:1229809122980912318692061Marinobacter adhaerens HP15 chromosome, complete genomehypothetical protein1e-94347
NC_016901:5130147:5159540515954051614591920Shewanella baltica OS678 chromosome, complete genomeSMC domain-containing protein4e-93342
NC_009997:5188221:5218918521891852208371920Shewanella baltica OS195, complete genomeATP-dependent endonuclease of the OLD family4e-93342
NC_010682:3313944:3328351332835133302551905Ralstonia pickettii 12J chromosome 1, complete sequenceSMC domain protein5e-93342
NC_002947:4167500:4182219418221941842222004Pseudomonas putida KT2440, complete genomehypothetical protein4e-90332
NC_005773:1333863:134306513430651343706642Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein6e-75282
NC_008209:3313087:3314733331473333158241092Roseobacter denitrificans OCh 114, complete genomehypothetical protein2e-61237
NC_012731:560199:5734025734025744331032Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative exonuclease8e-38159
NC_012731:560199:572413572413573402990Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative exonuclease3e-37157
NC_009075:15017:2882528825306091785Burkholderia pseudomallei 668 chromosome II, complete sequencehypothetical protein2e-1378.6
NC_013131:7945280:7983002798300279850112010Catenulispora acidiphila DSM 44928, complete genomeATP-dependent OLD family endonuclease3e-1377.8
NC_010688:2781624:2832215283221528340021788Xanthomonas campestris pv. campestris, complete genomeHypothetical protein ybjD.6e-1376.6
NC_013421:1780722:1780722178072217825121791Pectobacterium wasabiae WPP163, complete genomehypothetical protein6e-1376.6
NC_013850:1753716:1761023176102317628071785Klebsiella variicola At-22 chromosome, complete genomehypothetical protein6e-1376.6
NC_009138:1974935:2008206200820620099901785Herminiimonas arsenicoxydans, complete genomehypothetical protein3e-1273.9
NC_012691:2614603:2652902265290226546891788Tolumonas auensis DSM 9187, complete genomehypothetical protein9e-1272.4
NC_016943:21364:2534925349270461698Blastococcus saxobsidens DD2, complete genomeputative exonuclease1e-1172
NC_015138:2069739:2080545208054520829532409Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completehypothetical protein2e-1171.2
NC_011206:262844:2789572789572812782322Acidithiobacillus ferrooxidans ATCC 53993, complete genomeATP-dependent endonuclease, OLD family8e-1169.7
NC_013132:5250385:5272842527284252751842343Chitinophaga pinensis DSM 2588, complete genomeATP-dependent endonuclease, OLD family9e-1169.3
NC_008463:5313527:5348012534801253504352424Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein4e-1067.4
NC_019904:5308998:5319280531928053213012022Echinicola vietnamensis DSM 17526 chromosome, complete genomeOLD family ATP-dependent endonuclease4e-1067
NC_007651:3064530:3116914311691431192682355Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein5e-1066.6
NC_007929:1637261:1647690164769016497292040Lactobacillus salivarius subsp. salivarius UCC118, complete genomehypothetical protein7e-1066.2
NC_007974:2048000:2083641208364120854371797Ralstonia metallidurans CH34 chromosome 2, complete sequenceputative exonuclease1e-0965.5
NC_014618:690056:7142527142527165672316Enterobacter cloacae SCF1 chromosome, complete genomeATP-dependent endonuclease2e-0965.1
NC_021184:1484352:1502760150276015045771818Desulfotomaculum gibsoniae DSM 7213, complete genomeputative ATP-dependent endonuclease of the OLD family3e-0964.3
NC_007951:2087385:2102514210251421043551842Burkholderia xenovorans LB400 chromosome 1, complete sequencePredicted ATP-dependent endonuclease of the OLD family3e-0963.9
NC_002516:2113186:2120225212022521222221998Pseudomonas aeruginosa PAO1, complete genomehypothetical protein4e-0963.9
NC_015416:621513:6320776320776339181842Methanosaeta concilii GP-6 chromosome, complete genomehypothetical protein6e-0963.2
NC_011740:2859933:2868232286823228702802049Escherichia fergusonii ATCC 35469, complete genomehypothetical protein1e-0862
NC_008542:197500:2275572275572296262070Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceATP-dependent endonuclease of the OLD family-like protein1e-0862
NC_008686:1383891:1409683140968314119172235Paracoccus denitrificans PD1222 chromosome 1, complete sequencehypothetical protein1e-0862
NC_010170:4533416:4540566454056645423681803Bordetella petrii, complete genomehypothetical protein2e-0861.6
NC_010002:4544818:4554031455403145558331803Delftia acidovorans SPH-1, complete genomeATP-dependent endonuclease family protein2e-0861.6
NC_018750:6132619:6135635613563561374731839Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein3e-0861.2
NC_013456:1843000:1849597184959718517412145Vibrio sp. Ex25 chromosome 1, complete genomepathogenesis related protein3e-0860.8
NC_003552:2634828:2644101264410126461702070Methanosarcina acetivorans C2A, complete genomehypothetical protein3e-0860.8
NC_011768:79297:8994689946919612016Desulfatibacillum alkenivorans AK-01, complete genomeSMC domain protein5e-0860.1
NC_007951:2904644:2921660292166029240082349Burkholderia xenovorans LB400 chromosome 1, complete sequencePredicted ATP-dependent endonuclease, OLD family6e-0859.7
NC_016776:1609476:1611260161126016129781719Bacteroides fragilis 638R, complete genomeputative ATP-dependent endonuclease protein7e-0859.7
NC_017075:1869326:1894786189478618966031818Rubrivivax gelatinosus IL144, complete genomehypothetical protein9e-0859.3
NC_018645:3029785:3038101303810130402422142Desulfobacula toluolica Tol2, complete genomeDNA replication and repair protein, relted to recF8e-0859.3
NC_014311:3076519:3095153309515330969521800Ralstonia solanacearum PSI07 chromosome, complete genomehypothetical protein8e-0859.3
NC_009441:4328035:4346439434643943488202382Flavobacterium johnsoniae UW101 chromosome, complete genomeATP-dependent OLD family endonuclease1e-0758.9
NC_018866:1328623:1339251133925113413712121Dehalobacter sp. DCA chromosome, complete genomehypothetical protein1e-0758.9
NC_015379:908904:9647329647329669302199Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein1e-0758.9
NC_010465:3431500:3435097343509734371452049Yersinia pseudotuberculosis YPIII, complete genomeSMC (structural maintenance of chromosomes) family protein2e-0758.5
NC_007946:289425:2996222996223017692148Escherichia coli UTI89, complete genomehypothetical protein2e-0758.2
NC_010322:4623867:4639471463947146411951725Pseudomonas putida GB-1 chromosome, complete genomeSMC domain-containing protein4e-0757.4
NC_009720:3377071:3384604338460433864001797Xanthobacter autotrophicus Py2, complete genomeATP-dependent endonuclease family protein4e-0757.4
NC_013198:394000:4536564536564557462091Lactobacillus rhamnosus GG, complete genomepredicted ORF4e-0757
NC_008435:4530797:4542885454288545446331749Rhodopseudomonas palustris BisA53, complete genomeATP-dependent endonuclease of the OLD family-like protein5e-0756.6
NC_016609:2150863:2167046216704621689921947Niastella koreensis GR20-10 chromosome, complete genomeATP-dependent OLD family endonuclease6e-0756.6
NC_018645:3029785:3045540304554030473121773Desulfobacula toluolica Tol2, complete genomeATP-dependent endonuclease, OLD family8e-0756.2
NC_017030:9818064:9827517982751798295202004Corallococcus coralloides DSM 2259 chromosome, complete genomeATP-dependent OLD family endonuclease8e-0756.2
NC_017187:1564403:1579166157916615808781713Arcobacter butzleri ED-1, complete genomeputative endonuclease9e-0755.8
NC_011901:2983555:2988278298827829903022025Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeATP-dependent OLD family endonuclease9e-0755.8
NC_009720:750612:7571177571177589761860Xanthobacter autotrophicus Py2, complete genomeATP-dependent endonuclease family protein1e-0655.8
NC_015422:2806832:2827485282748528295092025Alicycliphilus denitrificans K601 chromosome, complete genomeATP-dependent OLD family endonuclease1e-0655.5
NC_009921:3255833:3265314326531432671401827Frankia sp. EAN1pec, complete genomeATP-dependent endonuclease of the OLD family-like protein1e-0655.5
NC_018868:619113:6601256601256620771953Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein1e-0655.5
NC_009801:3374501:3385117338511733869401824Escherichia coli E24377A, complete genomehypothetical protein2e-0655.1
NC_009076:3765441:3791874379187437935141641Burkholderia pseudomallei 1106a chromosome I, complete sequencehypothetical protein2e-0655.1
NC_012691:1743038:1778403177840317803551953Tolumonas auensis DSM 9187, complete genomeRecF/RecN/SMC N domain protein3e-0654.7
NC_010524:2117347:2124287212428721258551569Leptothrix cholodnii SP-6, complete genomehypothetical protein4e-0653.9
NC_020260:603796:6273036273036287601458Cronobacter sakazakii Sp291, complete genomehypothetical protein4e-0653.9
NC_010725:3273261:3282942328294232847381797Methylobacterium populi BJ001, complete genomeATP-dependent endonuclease family protein6e-0653.5
NC_008752:3511006:3516016351601635179411926Acidovorax avenae subsp. citrulli AAC00-1, complete genomeATP-dependent endonuclease family protein8e-0652.8
NC_020541:3156500:3172025317202531738061782Rhodanobacter sp. 2APBS1, complete genomehypothetical protein9e-0652.8