Pre_GI: BLASTP Hits

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Query: NC_004547:913553:922240 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 922240, End: 922566, Length: 327

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012917:3684840:369080836908083691569762Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein1e-0962
NC_009778:567000:597311597311598021711Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein5e-0856.2
NC_013508:3188978:324857332485733249376804Edwardsiella tarda EIB202, complete genomeputative phage capsid protein1e-0755.1
NC_014121:677799:690064690064690807744Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative phage capsid protein2e-0754.7
NC_012917:833721:839217839217839978762Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein7e-0752.8
NC_003198:4676536:468956646895664690426861Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative phage capsid protein2e-0651.6
NC_004631:4661000:467245546724554673315861Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative phage capsid protein2e-0651.6