Pre_GI: BLASTP Hits

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Query: NC_004347:4541742:4564385 Shewanella oneidensis MR-1, complete genome

Start: 4564385, End: 4565749, Length: 1365

Host Lineage: Shewanella oneidensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Oneida lake in New York, USA. Potential bioremediation organism. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This organism is a facultative anaerobe that is capable of using a wide variety of terminal electron acceptors during anaerobic respiration which may make it valuable for bioremediation. Since the bacteria can reduce chromium and uranium from the liquid phase to form insoluble compounds, they may be used to eliminate these two environmental pollutants from water.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012225:316000:3215893215893229351347Brachyspira hyodysenteriae WA1, complete genomeAMP-binding enzyme5e-34145
NC_015572:4576778:4601590460159046029181329Methylomonas methanica MC09 chromosome, complete genomeAMP-dependent synthetase and ligase4e-22106
NC_006677:1503513:1522341152234115239811641Gluconobacter oxydans 621H, complete genomehypothetical protein3e-1687
NC_011987:362997:3765993765993777741176Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequencehypothetical protein3e-1480.1
NC_015635:932240:954875954875955783909Microlunatus phosphovorus NM-1, complete genomehypothetical protein4e-0963.2
NC_002516:1031386:1078462107846210800151554Pseudomonas aeruginosa PAO1, complete genomeprobable coenzyme A ligase4e-0963.2
NC_018080:4465618:4468558446855844701111554Pseudomonas aeruginosa DK2 chromosome, complete genomecoenzyme A ligase4e-0963.2
NC_011770:4763506:4767345476734547688981554Pseudomonas aeruginosa LESB58, complete genomeputative coenzyme A ligase1e-0861.2
NC_008463:4566976:4569916456991645714691554Pseudomonas aeruginosa UCBPP-PA14, complete genomeprobable coenzyme A ligase2e-0861.2
NC_009656:4527457:4531296453129645328491554Pseudomonas aeruginosa PA7 chromosome, complete genomecoenzyme A ligase1e-0758.2
NC_011961:85083:8336883368850861719Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequencemedium-chain-fatty-acid--CoA ligase (Medium-chain acyl-CoA synthetase)5e-0756.2
NC_020126:1943092:1969105196910519704811377Myxococcus stipitatus DSM 14675, complete genomeAMP-dependent synthetase and ligase6e-0755.8
NC_010612:3813481:3817480381748038190931614Mycobacterium marinum M, complete genomemedium chain fatty-acid-CoA ligase FadD14_11e-0654.7