Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3808393 Shigella flexneri 2a str. 301, complete genome

Start: 3808393, End: 3809436, Length: 1044

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004431:4270305:4276297427629742773401044Escherichia coli CFT073, complete genomeShiA homolog0674
NC_012967:3769499:3777253377725337782961044Escherichia coli B str. REL606 chromosome, complete genomeShiA-like protein0673
NC_012947:44512:6614166141671841044Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein0673
NC_011750:3545466:3547230354723035483031074Escherichia coli IAI39 chromosome, complete genomeSHI-2 pathogenicity island protein5e-166583
CP002797:4775780:4789223478922347902631041Escherichia coli NA114, complete genomePutative ShiA3e-159561
NC_015580:3411802:341180234118023412797996Novosphingobium sp. PP1Y, complete genomeShiA-like protein1e-57223
NC_013364:1306756:131388113138811314153273Escherichia coli O111:H- str. 11128, complete genomehypothetical protein7e-1581.6
NC_013361:1335166:134229013422901342562273Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein7e-1581.6
NC_002695:1417912:142185914218591422131273Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein7e-1581.6
NC_002655:1103991:111007911100791110297219Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-0757