Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3717928 Shigella flexneri 2a str. 301, complete genome

Start: 3717928, End: 3718752, Length: 825

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009092:2282437:230840123084012309273873Shewanella loihica PV-4, complete genomebax protein, putative2e-28126
NC_012668:2115228:211522821152282116031804Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein3e-25115
NC_002505:1507860:152804015280401528843804Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completebax protein, putative3e-25115
NC_016445:984856:100503810050381005838801Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeBax protein3e-25115
NC_018678:2382708:238335223833522384143792Alteromonas macleodii str. 'English Channel 673' chromosome,mannosyl-glycoprotein endo-beta-N-acetylglucosamidase4e-22105
NC_015380:303215:3221613221613233991239Candidatus Pelagibacter sp. IMCC9063 chromosome, complete genomebax protein (hydrolyses peptidoglycan)1e-21103
NC_003454:370418:381821381821382432612Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeBAX protein9e-1580.9
NC_017192:159047:175027175027175785759Arcobacter sp. L, complete genomehypothetical protein1e-1480.5
NC_011653:1671910:168641616864161687192777Thermosipho africanus TCF52B, complete genomeBax protein5e-1271.6
NC_012039:53497:548135481355520708Campylobacter lari RM2100, complete genomemannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain protein4e-0962.4