Pre_GI: BLASTP Hits

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Query: NC_004129:926479:942753 Pseudomonas fluorescens Pf-5, complete genome

Start: 942753, End: 944207, Length: 1455

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007492:857428:8832158832158846691455Pseudomonas fluorescens PfO-1, complete genomeIron-sulfur cluster binding protein0908
NC_009434:3611738:3612556361255636140161461Pseudomonas stutzeri A1501, complete genomeiron-sulphur protein0826
NC_014752:1363562:1365036136503613664901455Neisseria lactamica ST-640, complete genomeiron-sulphur protein7e-151534
NC_008767:1363288:1366452136645213679061455Neisseria meningitidis FAM18, complete genomeconserved hypothetical iron-sulphur protein8e-151533
NC_014622:2477019:2489967248996724914871521Paenibacillus polymyxa SC2 chromosome, complete genomeiron-sulfur cluster binding protein4e-97355
NC_000913:303719:3215623215623229891428Escherichia coli K12, complete genomepredicted amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain5e-96352
NC_010473:279948:2971122971122985391428Escherichia coli str. K-12 substr. DH10B, complete genomepredicted amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain5e-96352
AC_000091:303719:3215623215623229891428Escherichia coli W3110 DNA, complete genomepredicted amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain5e-96352
NC_012947:3487392:3488991348899134904181428Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeiron-sulfur cluster binding protein5e-96352
NC_011415:351810:3564203564203578471428Escherichia coli SE11 chromosome, complete genomehypothetical protein3e-96352
NC_004431:364000:4068324068324082591428Escherichia coli CFT073, complete genomePutative electron transport protein ykgF3e-96352
NC_009800:349592:3729353729353743621428Escherichia coli HS, complete genomeiron-sulfur cluster binding protein9e-96351
NC_008253:334467:3990003990004004271428Escherichia coli 536, complete genomeputative electron transport protein YkgF2e-95350
NC_007946:289425:3423053423053437321428Escherichia coli UTI89, complete genomeputative electron transport protein YkgF5e-95348
NC_017167:674511:6944636944636958811419Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1iron-sulfur cluster binding protein1e-93344
NC_013235:4091185:4091931409193140934151485Nakamurella multipartita DSM 44233, complete genomeiron-sulfur cluster binding protein9e-94344
NC_015277:6213304:1425614256156441389Sphingobacterium sp. 21 chromosome, complete genomeLactate utilization protein B/C2e-93343
NC_013205:747502:7631167631167645341419Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,iron-sulfur cluster binding protein3e-93342
NC_013235:3913000:3913644391364439151491506Nakamurella multipartita DSM 44233, complete genomeiron-sulfur cluster binding protein5e-93342
NC_014643:535708:5495465495465511711626Rothia dentocariosa ATCC 17931 chromosome, complete genomeiron-sulfur cluster-binding protein1e-92340
NC_015957:3342169:3342954334295433444561503Streptomyces violaceusniger Tu 4113 chromosome, complete genomeiron-sulfur cluster binding protein1e-92340
NC_015567:1206727:1227860122786012292811422Serratia sp. AS9 chromosome, complete genomeiron-sulfur cluster binding protein5e-92338
NC_015566:1206500:1227675122767512290961422Serratia sp. AS12 chromosome, complete genomeiron-sulfur cluster binding protein5e-92338
NC_013508:343617:3717243717243731451422Edwardsiella tarda EIB202, complete genomeputative electron transport protein YkgF5e-92338
NC_008563:318993:3440223440223453231302Escherichia coli APEC O1, complete genomehypothetical protein5e-90332
NC_015859:370500:3729903729903744801491Corynebacterium variabile DSM 44702 chromosome, complete genomehypothetical protein5e-89328
NC_004193:375416:3957243957243971601437Oceanobacillus iheyensis HTE831, complete genomeiron-sulfur protein7e-88325
NC_013501:777947:8023318023318037311401Rhodothermus marinus DSM 4252, complete genomeprotein of unknown function DUF1621e-84314
NC_013355:1332263:1340858134085813423001443Zymomonas mobilis subsp. mobilis NCIB 11163, complete genomeprotein of unknown function DUF1621e-84313
NC_017317:944218:9565939565939581371545Corynebacterium ulcerans 809 chromosome, complete genomehypothetical protein1e-83311
NC_015683:947048:9594249594249609681545Corynebacterium ulcerans BR-AD22 chromosome, complete genomehypothetical protein1e-83311
NC_016781:844613:8773278773278788441518Corynebacterium pseudotuberculosis 3/99-5 chromosome, completeLactate utilization protein B6e-83308
NC_014329:844622:8773368773368788801545Corynebacterium pseudotuberculosis FRC41 chromosome, completehypothetical protein5e-83308
NC_016932:832748:8654488654488669921545Corynebacterium pseudotuberculosis 316 chromosome, complete genomeLactate utilization protein B5e-83308
NC_017031:863093:8771778771778787211545Corynebacterium pseudotuberculosis P54B96 chromosome, completeLactate utilization protein B5e-83308
NC_017300:863898:8772328772328787761545Corynebacterium pseudotuberculosis 1002 chromosome, completeLactate utilization protein B5e-83308
NC_017301:863500:8769548769548784981545Corynebacterium pseudotuberculosis C231 chromosome, completeLactate utilization protein B5e-83308
NC_017303:863060:8771478771478786911545Corynebacterium pseudotuberculosis I19 chromosome, complete genomeLactate utilization protein B5e-83308
NC_017305:863072:8771598771598787031545Corynebacterium pseudotuberculosis PAT10 chromosome, completeLactate utilization protein B5e-83308
NC_015703:3637312:3639438363943836408021365Runella slithyformis DSM 19594 chromosome, complete genomeLactate utilization protein B/C1e-81303
NC_011000:2732330:2750449275044927518221374Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative iron-sulphur cluster binding electron transport protein2e-81303
NC_018720:417500:4327964327964343011506Bifidobacterium asteroides PRL2011 chromosome, complete genomeiron-sulfur cluster binding protein9e-81301
NC_013223:1188500:1213128121312812152812154Desulfohalobium retbaense DSM 5692, complete genomeprotein of unknown function DUF1627e-81301
NC_015930:1397524:1409610140961014110821473Lactococcus garvieae ATCC 49156, complete genomeiron-sulfur cluster binding protein1e-79297
NC_017192:88940:1089571089571103361380Arcobacter sp. L, complete genomeputative iron-sulfur cluster binding protein7e-79295
NC_015388:2434922:2460496246049624618631368Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeLactate utilization protein B/C2e-71270
NC_007519:3240864:3240864324086432430052142Desulfovibrio alaskensis G20 chromosome, complete genomeiron-sulfur cluster-binding protein1e-70267
NC_008818:956231:9562319562319574481218Hyperthermus butylicus DSM 5456, complete genomeuniversally conserved protein2e-59230
NC_013926:920279:9488649488649501441281Aciduliprofundum boonei T469 chromosome, complete genomeprotein of unknown function DUF1624e-59229
NC_019942:987134:1025644102564410269271284Aciduliprofundum sp. MAR08-339, complete genomehypothetical protein2e-59229
NC_008701:1226797:1226797122679712279571161Pyrobaculum islandicum DSM 4184, complete genomeprotein of unknown function DUF1624e-57222
NC_003364:756813:7616947616947628331140Pyrobaculum aerophilum str. IM2, complete genomehypothetical protein2e-53210
NC_016885:1614427:1625228162522816263971170Pyrobaculum oguniense TE7 chromosome, complete genomehypothetical protein2e-51203
NC_009376:420000:4302264302264313741149Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomehypothetical protein7e-50198
NC_015318:249445:2663582663582684122055Hippea maritima DSM 10411 chromosome, complete genomeLactate utilization protein B/C2e-47190
NC_017167:674511:693799693799694470672Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1hypothetical protein7e-0962.4