Pre_GI: BLASTP Hits

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Query: NC_004129:5723787:5728407 Pseudomonas fluorescens Pf-5, complete genome

Start: 5728407, End: 5728491, Length: 85

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010501:4787963:47906314790631479071585Pseudomonas putida W619, complete genometRNA-Leu4e-0753.5
NC_015379:1151143:11736201173620117370485Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,tRNA-Leu4e-0753.5
NC_007492:5214709:52218225221822522190685Pseudomonas fluorescens PfO-1, complete genometRNA-Leu4e-0753.5
NC_016830:1182765:12032401203240120332182Pseudomonas fluorescens F113 chromosome, complete genometRNA-Leu2e-0651.2
NC_012660:5571500:55770995577099557718082Pseudomonas fluorescens SBW25 chromosome, complete genometRNA-Leu2e-0651.2